Signal Peptide prediction on SignalP
0.997ROC AUCAll-pos MLM+JEPA
Evaluation Results
| Method | Links | |
|---|---|---|
| All-pos MLM+JEPABackbone=ESM2-150M2026.05 | 0.997 | |
| All-pos MLM+JEPABackbone=ESM2-35M2026.05 | 0.996 | |
| MLM-onlyBackbone=AMPLIFY-120M2026.05 | 0.996 | |
| Masked-posBackbone=AMPLIFY-120M2026.05 | 0.996 | |
| All-pos MLM+JEPABackbone=Rand-Init-35M2026.05 | 0.996 | |
| Masked-posBackbone=Rand-Init-35M2026.05 | 0.996 | |
| Masked-posBackbone=ProteinBERT2-35M2026.05 | 0.996 | |
| MLM-onlyBackbone=ESM2-35M2026.05 | 0.995 | |
| Masked-pos (AdamW)Backbone=ESM2-35M2026.05 | 0.995 | |
| Masked-pos (SGDm)Backbone=ESM2-35M2026.05 | 0.995 | |
| Masked-pos (run 1)Backbone=ESM2-150M2026.05 | 0.995 | |
| MLM-onlyBackbone=Rand-Init-35M2026.05 | 0.995 | |
| MLM+JEPA @90kBackbone=Not specified2026.05 | 0.995 | |
| ProteinBERT2-150M masked-posBackbone=Not specified2026.05 | 0.995 | |
| BaselineBackbone=ESM2-35M2026.05 | 0.994 | |
| BaselineBackbone=ESM2-150M2026.05 | 0.994 | |
| MLM-onlyBackbone=ESM2-150M2026.05 | 0.994 | |
| Masked-pos (run 2)Backbone=ESM2-150M2026.05 | 0.994 | |
| BaselineBackbone=AMPLIFY-120M2026.05 | 0.993 | |
| All-pos MLM+JEPABackbone=AMPLIFY-120M2026.05 | 0.993 | |
| EMA (4h)Backbone=ESM2-150M2026.05 | 0.993 | |
| All-pos MLM+JEPABackbone=ProteinBERT2-35M2026.05 | 0.96 | |
| JEPA-onlyBackbone=ESM2-35M2026.05 | 0.956 | |
| JEPA-onlyBackbone=Rand-Init-35M2026.05 | 0.938 | |
| JEPA-only @90kBackbone=Not specified2026.05 | 0.938 | |
| ESM2-150M rand-init MLM-onlyBackbone=Not specified2026.05 | 0.933 | |
| MLM-onlyBackbone=ProteinBERT2-35M2026.05 | 0.919 | |
| BaselineBackbone=Rand-Init-35M2026.05 | 0.912 | |
| BaselineBackbone=ProteinBERT2-35M2026.05 | 0.902 | |
| JEPA-onlyBackbone=ESM2-150M2026.05 | 0.869 | |
| JEPA-onlyBackbone=AMPLIFY-120M2026.05 | 0.756 | |
| JEPA-onlyBackbone=ProteinBERT2-35M2026.05 | 0.721 |