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ResearchFormerly WizWand

Stability Prediction on Biomap

0.748Spearman CorrelationESM2-150M EMA (4h) EMA
-0.122480.103510.32950.55549May 8, 2026
Updated 5mo ago

Evaluation results

MethodLinks
ESM2-150M EMA (4h) EMABackbone=ESM2-150M EMA (4h), Objective=EMA2026.050.748
AMPLIFY-120M BaselineBackbone=AMPLIFY-120M, Objective=Baseline2026.050.729
ESM2-150M BaselineBackbone=ESM2-150M, Objective=Baseline2026.050.704
ESM2-150M Masked-pos (run 2)Backbone=ESM2-150M, Objective=Masked-pos (run 2)2026.050.699
ESM2-150M Masked-pos (run 1)Backbone=ESM2-150M, Objective=Masked-pos (run 1)2026.050.654
ProteinBERT2-35M Masked-posBackbone=ProteinBERT2-35M, Objective=Masked-pos2026.050.642
ESM2-150M MLM-onlyBackbone=ESM2-150M, Objective=MLM-only2026.050.629
MLM+JEPA @90kBackbone=-, Objective=MLM+JEPA @90k2026.050.628
ESM2-150M All-pos MLM+JEPABackbone=ESM2-150M, Objective=All-pos MLM+JEPA2026.050.627
Rand-Init-35M MLM-onlyBackbone=Rand-Init-35M, Objective=MLM-only2026.050.595
AMPLIFY-120M Masked-posBackbone=AMPLIFY-120M, Objective=Masked-pos2026.050.583
ProteinBERT2-150M masked-posBackbone=-, Objective=ProteinBERT2-150M masked-pos2026.050.571
AMPLIFY-120M MLM-onlyBackbone=AMPLIFY-120M, Objective=MLM-only2026.050.558
ESM2-35M Masked-pos (AdamW)Backbone=ESM2-35M, Objective=Masked-pos (AdamW)2026.050.545
Rand-Init-35M Masked-posBackbone=Rand-Init-35M, Objective=Masked-pos2026.050.537
ESM2-35M All-pos MLM+JEPABackbone=ESM2-35M, Objective=All-pos MLM+JEPA2026.050.529
ESM2-35M MLM-onlyBackbone=ESM2-35M, Objective=MLM-only2026.050.507
JEPA-only @90kBackbone=-, Objective=JEPA-only @90k2026.050.507
ESM2-35M Masked-pos (SGDm)Backbone=ESM2-35M, Objective=Masked-pos (SGDm)2026.050.493
AMPLIFY-120M All-pos MLM+JEPABackbone=AMPLIFY-120M, Objective=All-pos MLM+JEPA2026.050.451
ESM2-35M BaselineBackbone=ESM2-35M, Objective=Baseline2026.050.44
ProteinBERT2-35M All-pos MLM+JEPABackbone=ProteinBERT2-35M, Objective=All-pos MLM+JEPA2026.050.405
AMPLIFY-120M JEPA-onlyBackbone=AMPLIFY-120M, Objective=JEPA-only2026.050.379
ESM2-150M rand-init MLM-onlyBackbone=-, Objective=ESM2-150M rand-init MLM-only2026.050.359
Rand-Init-35M All-pos MLM+JEPABackbone=Rand-Init-35M, Objective=All-pos MLM+JEPA2026.050.328
ProteinBERT2-35M MLM-onlyBackbone=ProteinBERT2-35M, Objective=MLM-only2026.050.278
Rand-Init-35M JEPA-onlyBackbone=Rand-Init-35M, Objective=JEPA-only2026.050.249
ProteinBERT2-35M BaselineBackbone=ProteinBERT2-35M, Objective=Baseline2026.050.249
ESM2-150M JEPA-onlyBackbone=ESM2-150M, Objective=JEPA-only2026.050.116
Rand-Init-35M BaselineBackbone=Rand-Init-35M, Objective=Baseline2026.050.072
ProteinBERT2-35M JEPA-onlyBackbone=ProteinBERT2-35M, Objective=JEPA-only2026.050.018
ESM2-35M JEPA-onlyBackbone=ESM2-35M, Objective=JEPA-only2026.05-0.089