Stability Prediction on Biomap
0.748Spearman CorrelationESM2-150M EMA (4h) EMA
Evaluation Results
| Method | Links | |
|---|---|---|
| ESM2-150M EMA (4h) EMABackbone=ESM2-150M EMA (4h), Objective=EMA2026.05 | 0.748 | |
| AMPLIFY-120M BaselineBackbone=AMPLIFY-120M, Objective=Baseline2026.05 | 0.729 | |
| ESM2-150M BaselineBackbone=ESM2-150M, Objective=Baseline2026.05 | 0.704 | |
| ESM2-150M Masked-pos (run 2)Backbone=ESM2-150M, Objective=Masked-pos (run 2)2026.05 | 0.699 | |
| ESM2-150M Masked-pos (run 1)Backbone=ESM2-150M, Objective=Masked-pos (run 1)2026.05 | 0.654 | |
| ProteinBERT2-35M Masked-posBackbone=ProteinBERT2-35M, Objective=Masked-pos2026.05 | 0.642 | |
| ESM2-150M MLM-onlyBackbone=ESM2-150M, Objective=MLM-only2026.05 | 0.629 | |
| MLM+JEPA @90kBackbone=-, Objective=MLM+JEPA @90k2026.05 | 0.628 | |
| ESM2-150M All-pos MLM+JEPABackbone=ESM2-150M, Objective=All-pos MLM+JEPA2026.05 | 0.627 | |
| Rand-Init-35M MLM-onlyBackbone=Rand-Init-35M, Objective=MLM-only2026.05 | 0.595 | |
| AMPLIFY-120M Masked-posBackbone=AMPLIFY-120M, Objective=Masked-pos2026.05 | 0.583 | |
| ProteinBERT2-150M masked-posBackbone=-, Objective=ProteinBERT2-150M masked-pos2026.05 | 0.571 | |
| AMPLIFY-120M MLM-onlyBackbone=AMPLIFY-120M, Objective=MLM-only2026.05 | 0.558 | |
| ESM2-35M Masked-pos (AdamW)Backbone=ESM2-35M, Objective=Masked-pos (AdamW)2026.05 | 0.545 | |
| Rand-Init-35M Masked-posBackbone=Rand-Init-35M, Objective=Masked-pos2026.05 | 0.537 | |
| ESM2-35M All-pos MLM+JEPABackbone=ESM2-35M, Objective=All-pos MLM+JEPA2026.05 | 0.529 | |
| ESM2-35M MLM-onlyBackbone=ESM2-35M, Objective=MLM-only2026.05 | 0.507 | |
| JEPA-only @90kBackbone=-, Objective=JEPA-only @90k2026.05 | 0.507 | |
| ESM2-35M Masked-pos (SGDm)Backbone=ESM2-35M, Objective=Masked-pos (SGDm)2026.05 | 0.493 | |
| AMPLIFY-120M All-pos MLM+JEPABackbone=AMPLIFY-120M, Objective=All-pos MLM+JEPA2026.05 | 0.451 | |
| ESM2-35M BaselineBackbone=ESM2-35M, Objective=Baseline2026.05 | 0.44 | |
| ProteinBERT2-35M All-pos MLM+JEPABackbone=ProteinBERT2-35M, Objective=All-pos MLM+JEPA2026.05 | 0.405 | |
| AMPLIFY-120M JEPA-onlyBackbone=AMPLIFY-120M, Objective=JEPA-only2026.05 | 0.379 | |
| ESM2-150M rand-init MLM-onlyBackbone=-, Objective=ESM2-150M rand-init MLM-only2026.05 | 0.359 | |
| Rand-Init-35M All-pos MLM+JEPABackbone=Rand-Init-35M, Objective=All-pos MLM+JEPA2026.05 | 0.328 | |
| ProteinBERT2-35M MLM-onlyBackbone=ProteinBERT2-35M, Objective=MLM-only2026.05 | 0.278 | |
| Rand-Init-35M JEPA-onlyBackbone=Rand-Init-35M, Objective=JEPA-only2026.05 | 0.249 | |
| ProteinBERT2-35M BaselineBackbone=ProteinBERT2-35M, Objective=Baseline2026.05 | 0.249 | |
| ESM2-150M JEPA-onlyBackbone=ESM2-150M, Objective=JEPA-only2026.05 | 0.116 | |
| Rand-Init-35M BaselineBackbone=Rand-Init-35M, Objective=Baseline2026.05 | 0.072 | |
| ProteinBERT2-35M JEPA-onlyBackbone=ProteinBERT2-35M, Objective=JEPA-only2026.05 | 0.018 | |
| ESM2-35M JEPA-onlyBackbone=ESM2-35M, Objective=JEPA-only2026.05 | -0.089 |