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ResearchFormerly WizWand

Fluorescence Prediction on TAPE

0.636Spearman CorrelationProteinBERT2-150M masked-pos
0.249120.349560.450.55044May 8, 2026
Updated 5mo ago

Evaluation results

MethodLinks
ProteinBERT2-150M masked-posBackbone=-, Objective=ProteinBERT2-150M masked-pos2026.050.636
AMPLIFY-120M MLM-onlyBackbone=AMPLIFY-120M, Objective=MLM-only2026.050.621
Rand-Init-35M MLM-onlyBackbone=Rand-Init-35M, Objective=MLM-only2026.050.619
ProteinBERT2-35M Masked-posBackbone=ProteinBERT2-35M, Objective=Masked-pos2026.050.617
AMPLIFY-120M Masked-posBackbone=AMPLIFY-120M, Objective=Masked-pos2026.050.616
AMPLIFY-120M BaselineBackbone=AMPLIFY-120M, Objective=Baseline2026.050.615
ESM2-150M All-pos MLM+JEPABackbone=ESM2-150M, Objective=All-pos MLM+JEPA2026.050.61
ESM2-150M MLM-onlyBackbone=ESM2-150M, Objective=MLM-only2026.050.608
Rand-Init-35M Masked-posBackbone=Rand-Init-35M, Objective=Masked-pos2026.050.607
ESM2-35M MLM-onlyBackbone=ESM2-35M, Objective=MLM-only2026.050.603
AMPLIFY-120M All-pos MLM+JEPABackbone=AMPLIFY-120M, Objective=All-pos MLM+JEPA2026.050.598
MLM+JEPA @90kBackbone=-, Objective=MLM+JEPA @90k2026.050.593
ESM2-35M Masked-pos (AdamW)Backbone=ESM2-35M, Objective=Masked-pos (AdamW)2026.050.591
ESM2-35M BaselineBackbone=ESM2-35M, Objective=Baseline2026.050.59
ESM2-150M Masked-pos (run 2)Backbone=ESM2-150M, Objective=Masked-pos (run 2)2026.050.589
ESM2-35M Masked-pos (SGDm)Backbone=ESM2-35M, Objective=Masked-pos (SGDm)2026.050.584
ESM2-150M BaselineBackbone=ESM2-150M, Objective=Baseline2026.050.578
ProteinBERT2-35M All-pos MLM+JEPABackbone=ProteinBERT2-35M, Objective=All-pos MLM+JEPA2026.050.578
ESM2-35M All-pos MLM+JEPABackbone=ESM2-35M, Objective=All-pos MLM+JEPA2026.050.577
ESM2-150M Masked-pos (run 1)Backbone=ESM2-150M, Objective=Masked-pos (run 1)2026.050.577
ESM2-150M EMA (4h) EMABackbone=ESM2-150M EMA (4h), Objective=EMA2026.050.567
AMPLIFY-120M JEPA-onlyBackbone=AMPLIFY-120M, Objective=JEPA-only2026.050.559
ESM2-150M rand-init MLM-onlyBackbone=-, Objective=ESM2-150M rand-init MLM-only2026.050.558
ProteinBERT2-35M BaselineBackbone=ProteinBERT2-35M, Objective=Baseline2026.050.548
ProteinBERT2-35M MLM-onlyBackbone=ProteinBERT2-35M, Objective=MLM-only2026.050.537
JEPA-only @90kBackbone=-, Objective=JEPA-only @90k2026.050.495
Rand-Init-35M All-pos MLM+JEPABackbone=Rand-Init-35M, Objective=All-pos MLM+JEPA2026.050.465
Rand-Init-35M JEPA-onlyBackbone=Rand-Init-35M, Objective=JEPA-only2026.050.454
ESM2-150M JEPA-onlyBackbone=ESM2-150M, Objective=JEPA-only2026.050.44
Rand-Init-35M BaselineBackbone=Rand-Init-35M, Objective=Baseline2026.050.362
ProteinBERT2-35M JEPA-onlyBackbone=ProteinBERT2-35M, Objective=JEPA-only2026.050.295
ESM2-35M JEPA-onlyBackbone=ESM2-35M, Objective=JEPA-only2026.050.264