Fluorescence Prediction on TAPE
0.636Spearman CorrelationProteinBERT2-150M masked-pos
Evaluation Results
| Method | Links | |
|---|---|---|
| ProteinBERT2-150M masked-posBackbone=-, Objective=ProteinBERT2-150M masked-pos2026.05 | 0.636 | |
| AMPLIFY-120M MLM-onlyBackbone=AMPLIFY-120M, Objective=MLM-only2026.05 | 0.621 | |
| Rand-Init-35M MLM-onlyBackbone=Rand-Init-35M, Objective=MLM-only2026.05 | 0.619 | |
| ProteinBERT2-35M Masked-posBackbone=ProteinBERT2-35M, Objective=Masked-pos2026.05 | 0.617 | |
| AMPLIFY-120M Masked-posBackbone=AMPLIFY-120M, Objective=Masked-pos2026.05 | 0.616 | |
| AMPLIFY-120M BaselineBackbone=AMPLIFY-120M, Objective=Baseline2026.05 | 0.615 | |
| ESM2-150M All-pos MLM+JEPABackbone=ESM2-150M, Objective=All-pos MLM+JEPA2026.05 | 0.61 | |
| ESM2-150M MLM-onlyBackbone=ESM2-150M, Objective=MLM-only2026.05 | 0.608 | |
| Rand-Init-35M Masked-posBackbone=Rand-Init-35M, Objective=Masked-pos2026.05 | 0.607 | |
| ESM2-35M MLM-onlyBackbone=ESM2-35M, Objective=MLM-only2026.05 | 0.603 | |
| AMPLIFY-120M All-pos MLM+JEPABackbone=AMPLIFY-120M, Objective=All-pos MLM+JEPA2026.05 | 0.598 | |
| MLM+JEPA @90kBackbone=-, Objective=MLM+JEPA @90k2026.05 | 0.593 | |
| ESM2-35M Masked-pos (AdamW)Backbone=ESM2-35M, Objective=Masked-pos (AdamW)2026.05 | 0.591 | |
| ESM2-35M BaselineBackbone=ESM2-35M, Objective=Baseline2026.05 | 0.59 | |
| ESM2-150M Masked-pos (run 2)Backbone=ESM2-150M, Objective=Masked-pos (run 2)2026.05 | 0.589 | |
| ESM2-35M Masked-pos (SGDm)Backbone=ESM2-35M, Objective=Masked-pos (SGDm)2026.05 | 0.584 | |
| ESM2-150M BaselineBackbone=ESM2-150M, Objective=Baseline2026.05 | 0.578 | |
| ProteinBERT2-35M All-pos MLM+JEPABackbone=ProteinBERT2-35M, Objective=All-pos MLM+JEPA2026.05 | 0.578 | |
| ESM2-35M All-pos MLM+JEPABackbone=ESM2-35M, Objective=All-pos MLM+JEPA2026.05 | 0.577 | |
| ESM2-150M Masked-pos (run 1)Backbone=ESM2-150M, Objective=Masked-pos (run 1)2026.05 | 0.577 | |
| ESM2-150M EMA (4h) EMABackbone=ESM2-150M EMA (4h), Objective=EMA2026.05 | 0.567 | |
| AMPLIFY-120M JEPA-onlyBackbone=AMPLIFY-120M, Objective=JEPA-only2026.05 | 0.559 | |
| ESM2-150M rand-init MLM-onlyBackbone=-, Objective=ESM2-150M rand-init MLM-only2026.05 | 0.558 | |
| ProteinBERT2-35M BaselineBackbone=ProteinBERT2-35M, Objective=Baseline2026.05 | 0.548 | |
| ProteinBERT2-35M MLM-onlyBackbone=ProteinBERT2-35M, Objective=MLM-only2026.05 | 0.537 | |
| JEPA-only @90kBackbone=-, Objective=JEPA-only @90k2026.05 | 0.495 | |
| Rand-Init-35M All-pos MLM+JEPABackbone=Rand-Init-35M, Objective=All-pos MLM+JEPA2026.05 | 0.465 | |
| Rand-Init-35M JEPA-onlyBackbone=Rand-Init-35M, Objective=JEPA-only2026.05 | 0.454 | |
| ESM2-150M JEPA-onlyBackbone=ESM2-150M, Objective=JEPA-only2026.05 | 0.44 | |
| Rand-Init-35M BaselineBackbone=Rand-Init-35M, Objective=Baseline2026.05 | 0.362 | |
| ProteinBERT2-35M JEPA-onlyBackbone=ProteinBERT2-35M, Objective=JEPA-only2026.05 | 0.295 | |
| ESM2-35M JEPA-onlyBackbone=ESM2-35M, Objective=JEPA-only2026.05 | 0.264 |