Peptide-HLA binding prediction on Peptide-HLA
0.892ROC-AUCMasked-pos
Evaluation Results
| Method | Links | |
|---|---|---|
| Masked-posBackbone=Rand-Init-35M2026.05 | 0.892 | |
| ProteinBERT2-150M masked-posBackbone=Not specified2026.05 | 0.891 | |
| Masked-posBackbone=AMPLIFY-120M2026.05 | 0.884 | |
| MLM-onlyBackbone=AMPLIFY-120M2026.05 | 0.882 | |
| All-pos MLM+JEPABackbone=ESM2-150M2026.05 | 0.878 | |
| BaselineBackbone=AMPLIFY-120M2026.05 | 0.876 | |
| MLM-onlyBackbone=Rand-Init-35M2026.05 | 0.874 | |
| Masked-posBackbone=ProteinBERT2-35M2026.05 | 0.874 | |
| MLM-onlyBackbone=ESM2-150M2026.05 | 0.872 | |
| Masked-pos (run 1)Backbone=ESM2-150M2026.05 | 0.869 | |
| Masked-pos (run 2)Backbone=ESM2-150M2026.05 | 0.868 | |
| BaselineBackbone=ESM2-35M2026.05 | 0.864 | |
| MLM-onlyBackbone=ESM2-35M2026.05 | 0.864 | |
| Masked-pos (SGDm)Backbone=ESM2-35M2026.05 | 0.86 | |
| BaselineBackbone=ESM2-150M2026.05 | 0.859 | |
| All-pos MLM+JEPABackbone=ESM2-35M2026.05 | 0.854 | |
| Masked-pos (AdamW)Backbone=ESM2-35M2026.05 | 0.852 | |
| EMA (4h)Backbone=ESM2-150M2026.05 | 0.849 | |
| All-pos MLM+JEPABackbone=AMPLIFY-120M2026.05 | 0.845 | |
| MLM+JEPA @90kBackbone=Not specified2026.05 | 0.841 | |
| All-pos MLM+JEPABackbone=ProteinBERT2-35M2026.05 | 0.829 | |
| ESM2-150M rand-init MLM-onlyBackbone=Not specified2026.05 | 0.816 | |
| BaselineBackbone=Rand-Init-35M2026.05 | 0.794 | |
| MLM-onlyBackbone=ProteinBERT2-35M2026.05 | 0.794 | |
| BaselineBackbone=ProteinBERT2-35M2026.05 | 0.793 | |
| JEPA-onlyBackbone=ESM2-150M2026.05 | 0.762 | |
| All-pos MLM+JEPABackbone=Rand-Init-35M2026.05 | 0.734 | |
| JEPA-onlyBackbone=Rand-Init-35M2026.05 | 0.702 | |
| JEPA-onlyBackbone=AMPLIFY-120M2026.05 | 0.696 | |
| JEPA-onlyBackbone=ESM2-35M2026.05 | 0.643 | |
| JEPA-onlyBackbone=ProteinBERT2-35M2026.05 | 0.638 |