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ResearchFormerly WizWand

Peptide-HLA binding prediction on Peptide-HLA

0.892ROC-AUCMasked-pos
0.627840.696420.7650.83358May 8, 2026
Updated 6mo ago

Evaluation results

MethodLinks
Masked-posBackbone=Rand-Init-35M2026.050.892
ProteinBERT2-150M masked-posBackbone=Not specified2026.050.891
Masked-posBackbone=AMPLIFY-120M2026.050.884
MLM-onlyBackbone=AMPLIFY-120M2026.050.882
All-pos MLM+JEPABackbone=ESM2-150M2026.050.878
BaselineBackbone=AMPLIFY-120M2026.050.876
MLM-onlyBackbone=Rand-Init-35M2026.050.874
Masked-posBackbone=ProteinBERT2-35M2026.050.874
MLM-onlyBackbone=ESM2-150M2026.050.872
Masked-pos (run 1)Backbone=ESM2-150M2026.050.869
Masked-pos (run 2)Backbone=ESM2-150M2026.050.868
BaselineBackbone=ESM2-35M2026.050.864
MLM-onlyBackbone=ESM2-35M2026.050.864
Masked-pos (SGDm)Backbone=ESM2-35M2026.050.86
BaselineBackbone=ESM2-150M2026.050.859
All-pos MLM+JEPABackbone=ESM2-35M2026.050.854
Masked-pos (AdamW)Backbone=ESM2-35M2026.050.852
EMA (4h)Backbone=ESM2-150M2026.050.849
All-pos MLM+JEPABackbone=AMPLIFY-120M2026.050.845
MLM+JEPA @90kBackbone=Not specified2026.050.841
All-pos MLM+JEPABackbone=ProteinBERT2-35M2026.050.829
ESM2-150M rand-init MLM-onlyBackbone=Not specified2026.050.816
BaselineBackbone=Rand-Init-35M2026.050.794
MLM-onlyBackbone=ProteinBERT2-35M2026.050.794
BaselineBackbone=ProteinBERT2-35M2026.050.793
JEPA-onlyBackbone=ESM2-150M2026.050.762
All-pos MLM+JEPABackbone=Rand-Init-35M2026.050.734
JEPA-onlyBackbone=Rand-Init-35M2026.050.702
JEPA-onlyBackbone=AMPLIFY-120M2026.050.696
JEPA-onlyBackbone=ESM2-35M2026.050.643
JEPA-onlyBackbone=ProteinBERT2-35M2026.050.638