Subcellular Localization prediction on Subcellular Localization
0.924ROC AUCMasked-pos (run 1)
Evaluation Results
| Method | Links | |
|---|---|---|
| Masked-pos (run 1)Backbone=ESM2-150M2026.05 | 0.924 | |
| Masked-pos (run 2)Backbone=ESM2-150M2026.05 | 0.921 | |
| BaselineBackbone=ESM2-150M2026.05 | 0.92 | |
| BaselineBackbone=ESM2-35M2026.05 | 0.911 | |
| EMA (4h)Backbone=ESM2-150M2026.05 | 0.909 | |
| Masked-pos (AdamW)Backbone=ESM2-35M2026.05 | 0.908 | |
| Masked-pos (SGDm)Backbone=ESM2-35M2026.05 | 0.907 | |
| MLM-onlyBackbone=AMPLIFY-120M2026.05 | 0.904 | |
| BaselineBackbone=AMPLIFY-120M2026.05 | 0.903 | |
| MLM-onlyBackbone=ESM2-35M2026.05 | 0.901 | |
| MLM-onlyBackbone=ESM2-150M2026.05 | 0.9 | |
| MLM-onlyBackbone=Rand-Init-35M2026.05 | 0.895 | |
| All-pos MLM+JEPABackbone=ESM2-150M2026.05 | 0.892 | |
| Masked-posBackbone=AMPLIFY-120M2026.05 | 0.89 | |
| All-pos MLM+JEPABackbone=AMPLIFY-120M2026.05 | 0.889 | |
| Masked-posBackbone=ProteinBERT2-35M2026.05 | 0.889 | |
| MLM+JEPA @90kBackbone=Not specified2026.05 | 0.888 | |
| Masked-posBackbone=Rand-Init-35M2026.05 | 0.887 | |
| ProteinBERT2-150M masked-posBackbone=Not specified2026.05 | 0.883 | |
| All-pos MLM+JEPABackbone=ESM2-35M2026.05 | 0.858 | |
| BaselineBackbone=Rand-Init-35M2026.05 | 0.817 | |
| ESM2-150M rand-init MLM-onlyBackbone=Not specified2026.05 | 0.816 | |
| All-pos MLM+JEPABackbone=ProteinBERT2-35M2026.05 | 0.812 | |
| BaselineBackbone=ProteinBERT2-35M2026.05 | 0.803 | |
| All-pos MLM+JEPABackbone=Rand-Init-35M2026.05 | 0.799 | |
| MLM-onlyBackbone=ProteinBERT2-35M2026.05 | 0.789 | |
| JEPA-onlyBackbone=Rand-Init-35M2026.05 | 0.774 | |
| JEPA-only @90kBackbone=Not specified2026.05 | 0.762 | |
| JEPA-onlyBackbone=ESM2-150M2026.05 | 0.736 | |
| JEPA-onlyBackbone=ESM2-35M2026.05 | 0.681 | |
| JEPA-onlyBackbone=ProteinBERT2-35M2026.05 | 0.66 | |
| JEPA-onlyBackbone=AMPLIFY-120M2026.05 | 0.648 |