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Subcellular Localization prediction on Subcellular Localization

0.924ROC AUCMasked-pos (run 1)
0.636960.711480.7860.86052May 8, 2026

Evaluation results

MethodLinks
Masked-pos (run 1)Backbone=ESM2-150M2026.050.924
Masked-pos (run 2)Backbone=ESM2-150M2026.050.921
BaselineBackbone=ESM2-150M2026.050.92
BaselineBackbone=ESM2-35M2026.050.911
EMA (4h)Backbone=ESM2-150M2026.050.909
Masked-pos (AdamW)Backbone=ESM2-35M2026.050.908
Masked-pos (SGDm)Backbone=ESM2-35M2026.050.907
MLM-onlyBackbone=AMPLIFY-120M2026.050.904
BaselineBackbone=AMPLIFY-120M2026.050.903
MLM-onlyBackbone=ESM2-35M2026.050.901
MLM-onlyBackbone=ESM2-150M2026.050.9
MLM-onlyBackbone=Rand-Init-35M2026.050.895
All-pos MLM+JEPABackbone=ESM2-150M2026.050.892
Masked-posBackbone=AMPLIFY-120M2026.050.89
All-pos MLM+JEPABackbone=AMPLIFY-120M2026.050.889
Masked-posBackbone=ProteinBERT2-35M2026.050.889
MLM+JEPA @90kBackbone=Not specified2026.050.888
Masked-posBackbone=Rand-Init-35M2026.050.887
ProteinBERT2-150M masked-posBackbone=Not specified2026.050.883
All-pos MLM+JEPABackbone=ESM2-35M2026.050.858
BaselineBackbone=Rand-Init-35M2026.050.817
ESM2-150M rand-init MLM-onlyBackbone=Not specified2026.050.816
All-pos MLM+JEPABackbone=ProteinBERT2-35M2026.050.812
BaselineBackbone=ProteinBERT2-35M2026.050.803
All-pos MLM+JEPABackbone=Rand-Init-35M2026.050.799
MLM-onlyBackbone=ProteinBERT2-35M2026.050.789
JEPA-onlyBackbone=Rand-Init-35M2026.050.774
JEPA-only @90kBackbone=Not specified2026.050.762
JEPA-onlyBackbone=ESM2-150M2026.050.736
JEPA-onlyBackbone=ESM2-35M2026.050.681
JEPA-onlyBackbone=ProteinBERT2-35M2026.050.66
JEPA-onlyBackbone=AMPLIFY-120M2026.050.648