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ResearchFormerly WizWand

Protein-Protein Interaction on Bernett

57.3ROC-AUCMasked-pos (run 2)
51.16452.75754.3555.943May 8, 2026
Updated 5mo ago

Evaluation results

MethodLinks
Masked-pos (run 2)Backbone=ESM2-150M2026.0557.3
MLM-onlyBackbone=AMPLIFY-120M2026.0557.2
Masked-pos (run 1)Backbone=ESM2-150M2026.0556.6
MLM-onlyBackbone=ESM2-35M2026.0556.5
BaselineBackbone=ESM2-150M2026.0556.5
MLM-onlyBackbone=ESM2-150M2026.0556.5
All-pos MLM+JEPABackbone=ESM2-150M2026.0556.1
BaselineBackbone=AMPLIFY-120M2026.0556.1
All-pos MLM+JEPABackbone=AMPLIFY-120M2026.0555.9
Masked-posBackbone=AMPLIFY-120M2026.0555.9
Masked-pos (SGDm)Backbone=ESM2-35M2026.0555.8
BaselineBackbone=ESM2-35M2026.0555.5
Masked-posBackbone=ProteinBERT2-35M2026.0555.4
All-pos MLM+JEPABackbone=ESM2-35M2026.0555.2
Masked-pos (AdamW)Backbone=ESM2-35M2026.0555.1
Masked-posBackbone=Rand-Init-35M2026.0554.6
MLM+JEPA @90kBackbone=Not specified2026.0554.5
ESM2-150M rand-init MLM-onlyBackbone=Not specified2026.0554.5
All-pos MLM+JEPABackbone=ProteinBERT2-35M2026.0553.9
JEPA-onlyBackbone=ESM2-150M2026.0553.3
JEPA-only @90kBackbone=Not specified2026.0553.2
ProteinBERT2-150M masked-posBackbone=Not specified2026.0553.1
JEPA-onlyBackbone=ESM2-35M2026.0552.9
MLM-onlyBackbone=Rand-Init-35M2026.0552.7
MLM-onlyBackbone=ProteinBERT2-35M2026.0552.7
BaselineBackbone=Rand-Init-35M2026.0552.6
BaselineBackbone=ProteinBERT2-35M2026.0552.2
All-pos MLM+JEPABackbone=Rand-Init-35M2026.0552.1
JEPA-onlyBackbone=ProteinBERT2-35M2026.0552.1
JEPA-onlyBackbone=AMPLIFY-120M2026.0552
JEPA-onlyBackbone=Rand-Init-35M2026.0551.4