Molecular Function Gene Ontology classification on GO MF
51.1F1-macroBaseline
Evaluation Results
| Method | Links | |
|---|---|---|
| BaselineBackbone=ESM2-150M2026.05 | 51.1 | |
| All-pos MLM+JEPABackbone=AMPLIFY-120M2026.05 | 51 | |
| MLM-onlyBackbone=AMPLIFY-120M2026.05 | 50.5 | |
| BaselineBackbone=AMPLIFY-120M2026.05 | 49.9 | |
| All-pos MLM+JEPABackbone=ESM2-150M2026.05 | 49.6 | |
| MLM-onlyBackbone=ESM2-150M2026.05 | 46.6 | |
| BaselineBackbone=ESM2-35M2026.05 | 45.8 | |
| MLM-onlyBackbone=ESM2-35M2026.05 | 43.1 | |
| MLM+JEPA @90kTraining step=90k2026.05 | 42.6 | |
| All-pos MLM+JEPABackbone=ESM2-35M2026.05 | 28.9 | |
| MLM-onlyBackbone=Rand-Init-35M2026.05 | 28.4 | |
| MLM-onlyBackbone=ProteinBERT2-35M2026.05 | 12.4 | |
| BaselineBackbone=ProteinBERT2-35M2026.05 | 12.3 | |
| BaselineBackbone=Rand-Init-35M2026.05 | 6.5 | |
| JEPA-only @90kTraining step=90k2026.05 | 6.2 | |
| All-pos MLM+JEPABackbone=ProteinBERT2-35M2026.05 | 6.1 | |
| JEPA-onlyBackbone=ESM2-150M2026.05 | 5.6 | |
| All-pos MLM+JEPABackbone=Rand-Init-35M2026.05 | 5.4 | |
| JEPA-onlyBackbone=AMPLIFY-120M2026.05 | 4.4 | |
| JEPA-onlyBackbone=Rand-Init-35M2026.05 | 3.7 | |
| JEPA-onlyBackbone=ESM2-35M2026.05 | 2.2 | |
| JEPA-onlyBackbone=ProteinBERT2-35M2026.05 | 0.2 |