Metal Ion Binding Prediction on Metal Ion
82.4ROC-AUCAll-pos MLM+JEPA
Evaluation Results
| Method | Links | |
|---|---|---|
| All-pos MLM+JEPABackbone=ESM2-150M2026.05 | 82.4 | |
| BaselineBackbone=AMPLIFY-120M2026.05 | 81.2 | |
| Masked-posBackbone=AMPLIFY-120M2026.05 | 80.9 | |
| Masked-pos (run 2)Backbone=ESM2-150M2026.05 | 80.5 | |
| MLM-onlyBackbone=AMPLIFY-120M2026.05 | 80.3 | |
| Masked-pos (run 1)Backbone=ESM2-150M2026.05 | 80.1 | |
| All-pos MLM+JEPABackbone=AMPLIFY-120M2026.05 | 79.9 | |
| MLM-onlyBackbone=ESM2-150M2026.05 | 79.6 | |
| BaselineBackbone=ESM2-150M2026.05 | 79.3 | |
| BaselineBackbone=ESM2-35M2026.05 | 79 | |
| EMA (4h)Backbone=ESM2-150M2026.05 | 78.5 | |
| Masked-pos (SGDm)Backbone=ESM2-35M2026.05 | 78 | |
| Masked-pos (AdamW)Backbone=ESM2-35M2026.05 | 77.5 | |
| MLM-onlyBackbone=ESM2-35M2026.05 | 76.8 | |
| MLM+JEPA @90kBackbone=Not specified2026.05 | 76.5 | |
| Masked-posBackbone=ProteinBERT2-35M2026.05 | 74.8 | |
| MLM-onlyBackbone=Rand-Init-35M2026.05 | 73.3 | |
| ProteinBERT2-150M masked-posBackbone=Not specified2026.05 | 72.4 | |
| Masked-posBackbone=Rand-Init-35M2026.05 | 71.1 | |
| All-pos MLM+JEPABackbone=ESM2-35M2026.05 | 70.6 | |
| BaselineBackbone=ProteinBERT2-35M2026.05 | 66.1 | |
| MLM-onlyBackbone=ProteinBERT2-35M2026.05 | 65.8 | |
| BaselineBackbone=Rand-Init-35M2026.05 | 65 | |
| All-pos MLM+JEPABackbone=Rand-Init-35M2026.05 | 62.6 | |
| All-pos MLM+JEPABackbone=ProteinBERT2-35M2026.05 | 62.6 | |
| JEPA-only @90kBackbone=Not specified2026.05 | 60.9 | |
| JEPA-onlyBackbone=ESM2-150M2026.05 | 60.5 | |
| ESM2-150M rand-init MLM-onlyBackbone=Not specified2026.05 | 60.2 | |
| JEPA-onlyBackbone=Rand-Init-35M2026.05 | 59.4 | |
| JEPA-onlyBackbone=ESM2-35M2026.05 | 58 | |
| JEPA-onlyBackbone=AMPLIFY-120M2026.05 | 56.4 | |
| JEPA-onlyBackbone=ProteinBERT2-35M2026.05 | 53.1 |