Few-shot Biomarker and Subtype Prediction on CPTAC k=25 (TCGA-trained, test)
98.3Lung ST ScorePRISM
Evaluation results
| Method | Links | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PRISMk=252024.11 | 98.3 | — | 45.9 | 54 | 69.6 | 86.9 | 75.1 | 17.9 | 53 | 25.8 | 57.4 | 58.4 | |
| COBRA-H0k=25, Backbone=H-Optimus-0, Feature_Fusion=All four training FMs used for weighting vector2024.11 | 96 | — | 41.8 | 63.8 | 71.5 | 85.9 | 68.8 | 17.1 | 79 | 38.9 | 59.7 | 62.2 | |
| COBRA-UNIk=25, Backbone=UNI, Feature_Fusion=All four training FMs used for weighting vector2024.11 | 95 | — | 32.5 | 57.8 | 74.5 | 86.2 | 72.6 | 18.9 | 67.8 | 36.3 | 58.8 | 60 | |
| COBRA-V2k=25, Backbone=Virchow-2, Feature_Fusion=All four training FMs used for weighting vector2024.11 | 94.4 | — | 34.5 | 59.2 | 72.6 | 89.7 | 72.2 | 24 | 75 | 43.2 | 59.6 | 62.4 | |
| MADELEINEk=252024.11 | 94.1 | — | 34.1 | 50.7 | 69.2 | 86.7 | 72.6 | 24.1 | 57.5 | 29.5 | 61.4 | 58 | |
| CONCHk=25, Pooling=Mean over patch embeddings2024.11 | 92 | — | 35.6 | 47.5 | 67 | 85.7 | 72.7 | 17.1 | 56.2 | 30.8 | 60.9 | 56.5 | |
| COBRA-CTPk=25, Backbone=CTransPath, Feature_Fusion=All four training FMs used for weighting vector2024.11 | 90.2 | — | 31.6 | 53.1 | 70.7 | 83.2 | 71.1 | 16.7 | 64.5 | 34.9 | 54 | 57 | |
| CHIEFk=252024.11 | 85.2 | — | 30.9 | 52.2 | 67.3 | 83.8 | 76.3 | 16.6 | 58.6 | 29.9 | 54.9 | 55.6 | |
| Virchow2k=25, Pooling=Mean over patch embeddings2024.11 | 84.9 | — | 30.2 | 54.3 | 64.6 | 88.5 | 72.5 | 22.3 | 72.8 | 32.8 | 61.2 | 58.4 | |
| GigaPathk=25, Pooling=Mean over patch embeddings2024.11 | 83.7 | — | 27.5 | 59.3 | 64 | 85.3 | 69.2 | 18.9 | 66 | 33.7 | 59.9 | 56.8 | |
| H-Optimusk=25, Pooling=Mean over patch embeddings2024.11 | 83 | — | 34.4 | 57 | 63.5 | 85.4 | 66.2 | 16.1 | 70.9 | 34.4 | 62 | 57.3 | |
| UNIk=25, Pooling=Mean over patch embeddings2024.11 | 81.1 | — | 26.4 | 53.5 | 66.1 | 83.6 | 70.2 | 18 | 64.2 | 30 | 60.9 | 55.4 | |
| Virchowk=25, Pooling=Mean over patch embeddings2024.11 | 80.6 | — | 30.2 | 47.8 | 62.5 | 75.8 | 65.9 | 16.6 | 48.7 | 24.7 | 57 | 51 | |
| GigaPath-SEk=25, Module=Slide Encoder2024.11 | 80.1 | — | 25.4 | 46.2 | 63.2 | 70.9 | 66.6 | 17.9 | 38.2 | 23 | 54 | 48.5 | |
| CTransPathk=25, Pooling=Mean over patch embeddings2024.11 | 72.9 | — | 25.4 | 44.5 | 63.1 | 79.6 | 70.5 | 13.3 | 57.8 | 31.2 | 57.1 | 51.5 |