Classification on CPTAC k=5 positive samples
91.7Lung ST PerformancePRISM
Evaluation Results
| Method | Links | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PRISMshot=k=5, fusion_mode=all four training FMs2024.11 | 91.7 | 37.1 | 49.5 | 54.8 | 59 | 41.2 | 12.4 | 41.9 | 23.4 | 32 | 44.3 | |
| PRISMk=5, mean over patch embeddings=true, all-FM weighting vector (Eq. 8)=true2024.11 | 91.7 | 64.9 | 57.2 | 60.3 | 60.8 | 57.7 | 50.5 | 62 | 55.5 | 50.2 | 61.1 | |
| MADELEINEk=5, mean over patch embeddings=true, all-FM weighting vector (Eq. 8)=true2024.11 | 78.1 | 58.2 | 57.2 | 52.7 | 57.4 | 55.9 | 52.2 | 54.5 | 51.8 | 51.8 | 57 | |
| COBRA-H0k=5, mean over patch embeddings=true2024.11 | 77.2 | 65.3 | 62.2 | 56.4 | 54.6 | 52.7 | 51.4 | 54.5 | 52.1 | 50.3 | 57.7 | |
| COBRA-V2k=5, mean over patch embeddings=true2024.11 | 77.2 | 62.6 | 59.3 | 55.5 | 58 | 55.4 | 56 | 56.6 | 54.2 | 50 | 58.5 | |
| MADELEINEshot=k=52024.11 | 76 | 32.3 | 45.3 | 43.7 | 55 | 45.4 | 21.2 | 38.9 | 22.6 | 50.5 | 43.1 | |
| CONCHk=5, mean over patch embeddings=true2024.11 | 74.9 | 58.3 | 52.9 | 53.4 | 54.3 | 58 | 50.2 | 54.3 | 50.7 | 50 | 55.7 | |
| COBRA-V2Backbone=Virchow-2, shot=k=52024.11 | 74.8 | 36 | 47.6 | 45.5 | 64.3 | 43.4 | 19.5 | 32.7 | 23.9 | 42.8 | 43 | |
| COBRA-H0Backbone=H-Optimus-0, shot=k=52024.11 | 74.3 | 39.2 | 49.7 | 41.2 | 49.4 | 48.3 | 9.7 | 32.9 | 23.3 | 41.8 | 41 | |
| COBRA-UNIk=5, mean over patch embeddings=true2024.11 | 73.1 | 61.6 | 56.3 | 54.8 | 54.2 | 56.4 | 53 | 52.6 | 51.8 | 50.8 | 56.5 | |
| CONCHshot=k=52024.11 | 70.4 | 32 | 37.8 | 44.2 | 45.5 | 55.3 | 15.5 | 38.2 | 21.6 | 46.9 | 40.7 | |
| COBRA-CTPk=5, mean over patch embeddings=true2024.11 | 67.7 | 56.6 | 57.8 | 55.4 | 55.1 | 53.5 | 50.9 | 54.7 | 50.4 | 48.5 | 55.1 | |
| COBRA-UNIBackbone=UNI, shot=k=52024.11 | 66.3 | 32.1 | 41.4 | 37.5 | 60.7 | 51.9 | 13.8 | 28.7 | 23.8 | 44.1 | 40 | |
| CHIEFk=5, mean over patch embeddings=true2024.11 | 65.4 | 54.4 | 55.8 | 51.7 | 54.5 | 57.1 | 51.7 | 52.1 | 48.9 | 49.5 | 54.1 | |
| COBRA-CTPBackbone=CTransPath, shot=k=52024.11 | 65.2 | 30.3 | 48.3 | 39.5 | 62.9 | 54.9 | 11.4 | 34 | 21.8 | 39.9 | 40.8 | |
| Virchow2k=52024.11 | 64.3 | 53.7 | 58.8 | 51.6 | 56 | 54.7 | 51.2 | 55.1 | 54.3 | 50.5 | 55 | |
| CHIEFshot=k=52024.11 | 63.1 | 27.5 | 45.7 | 35.4 | 62.7 | 48.4 | 14.2 | 34.1 | 22.8 | 36.2 | 39 | |
| H-Optimusk=52024.11 | 63 | 56 | 56.8 | 50.9 | 54.2 | 49.7 | 50.2 | 54.8 | 50.7 | 51.3 | 53.8 | |
| GigaPathk=52024.11 | 62.2 | 52.7 | 57.8 | 52.8 | 51.5 | 51.8 | 50.9 | 53.7 | 51 | 51.2 | 53.6 | |
| Virchow2shot=k=52024.11 | 59.4 | 23.5 | 46.2 | 38.3 | 57.6 | 45.6 | 15.7 | 35.8 | 26.6 | 42.4 | 39.1 | |
| GigaPath-SEk=52024.11 | 59.2 | 54.2 | 54.9 | 52 | 53.7 | 51.4 | 50.7 | 50 | 52 | 49.2 | 52.7 | |
| UNIk=52024.11 | 58.9 | 53.5 | 52.8 | 52.1 | 53.4 | 53.3 | 51.9 | 54.9 | 48.9 | 51.1 | 53.1 | |
| CTransPathk=52024.11 | 58.7 | 52.5 | 54.1 | 50.6 | 53.5 | 54.3 | 51 | 51.3 | 48.4 | 51.3 | 52.6 | |
| H-Optimusshot=k=52024.11 | 58.4 | 27.2 | 41.1 | 30.9 | 54.4 | 49.5 | 10.5 | 31.9 | 22.5 | 42.7 | 36.9 | |
| CTransPathshot=k=52024.11 | 58.1 | 25 | 42.7 | 30.8 | 53.7 | 53.8 | 13.1 | 33.8 | 22.2 | 40.5 | 37.4 | |
| Virchowk=52024.11 | 55.2 | 49.5 | 51.7 | 49.3 | 53.5 | 48.6 | 46.5 | 52.6 | 51 | 50.2 | 50.8 | |
| GigaPathshot=k=52024.11 | 54.3 | 24.7 | 42.8 | 39.7 | 55.3 | 45.1 | 13.1 | 30.6 | 22.7 | 48.5 | 37.7 | |
| GigaPath-SEshot=k=52024.11 | 50.5 | 27.5 | 39.9 | 41 | 55.9 | 40.4 | 17 | 28.7 | 23.7 | 54.3 | 37.9 | |
| Virchowshot=k=52024.11 | 50.4 | 16.9 | 33 | 26.5 | 50 | 39.9 | 9.9 | 36.6 | 24 | 41.1 | 32.8 | |
| UNIshot=k=52024.11 | 48.3 | 23.1 | 33.5 | 30.4 | 58.4 | 53.2 | 16.4 | 36.5 | 23.8 | 41.6 | 36.5 |