# Few-shot Biomarker and Subtype Prediction on CPTAC k=25 (TCGA-trained, test) Source: [Few-shot Biomarker and Subtype Prediction on CPTAC k=25 (TCGA-trained, test)]() Collection index: [llms.txt]() Data updated: 2026-02-26T05:48:48.303Z Evaluation of few-shot learning models for predicting specific cancer biomarkers and molecular subtypes using the CPTAC dataset, trained under k=25 few-shot conditions derived from TCGA features, evaluated on the test split. A research result applies to its stated dataset, split, metric and evaluation configuration. Compare like-for-like settings, preserve the metric's unit and direction, and distinguish paper-reported results from independent reproduction. The best result recorded here is not a claim of exhaustive, current global coverage. | Scope | Recorded value | | --- | --- | | Task | Few-shot Biomarker and Subtype Prediction | | Dataset (including any stated split) | CPTAC TCGA-trained few-shot (k=25) (test) | | Metric | Lung ST Score | | Unit | PERCENT | | Direction | Higher is better | | Results loaded | 15 of 15 | | Coverage | All results currently returned for this benchmark | Evaluation settings may differ between results. The original papers and recorded configurations are needed to establish comparability. A shared metric name alone does not establish an identical protocol. ## Metrics - [Lung ST Score](): Higher is better; unit: PERCENT. - [AUPRC](): Higher is better; unit: PERCENT. - [LUAD STK11 Score](): Higher is better; unit: PERCENT. - [LUAD EGFR Score](): Higher is better; unit: PERCENT. - [LUAD TP53 Score](): Higher is better; unit: PERCENT. - [BRCA ESR1 Score](): Higher is better; unit: PERCENT. - [BRCA PGR Score](): Higher is better; unit: PERCENT. - [BRCA ERBB2 Score](): Higher is better; unit: PERCENT. - [COAD MSI Score](): Higher is better; unit: PERCENT. - [COAD BRAF Score](): Higher is better; unit: PERCENT. - [Side Prediction Score](): Higher is better; unit: PERCENT. - [Average Prediction Score](): Higher is better; unit: PERCENT. ## Recorded results | Method | Lung ST Score | Result date | Report paper | | --- | --- | --- | --- | | PRISM | 98.3 | Not recorded | 68fa77981e209131cea743e8 | | COBRA-H0 | 96 | Not recorded | 68fa77981e209131cea743e8 | | COBRA-UNI | 95 | Not recorded | 68fa77981e209131cea743e8 | | COBRA-V2 | 94.4 | Not recorded | 68fa77981e209131cea743e8 | | MADELEINE | 94.1 | Not recorded | 68fa77981e209131cea743e8 | | CONCH | 92 | Not recorded | 68fa77981e209131cea743e8 | | COBRA-CTP | 90.2 | Not recorded | 68fa77981e209131cea743e8 | | CHIEF | 85.2 | Not recorded | 68fa77981e209131cea743e8 | | Virchow2 | 84.9 | Not recorded | 68fa77981e209131cea743e8 | | GigaPath | 83.7 | Not recorded | 68fa77981e209131cea743e8 | | H-Optimus | 83 | Not recorded | 68fa77981e209131cea743e8 | | UNI | 81.1 | Not recorded | 68fa77981e209131cea743e8 | | Virchow | 80.6 | Not recorded | 68fa77981e209131cea743e8 | | GigaPath-SE | 80.1 | Not recorded | 68fa77981e209131cea743e8 | | CTransPath | 72.9 | Not recorded | 68fa77981e209131cea743e8 | ### PRISM Lung ST Score: 98.3. Result ID: 69954beb3badfaffe63b1dcf. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"k":25}. This record does not assert independent reproduction. ### COBRA-H0 Lung ST Score: 96. Result ID: 69954beb3badfaffe63b1dd1. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"k":25,"Backbone":"H-Optimus-0","Feature\_Fusion":"All four training FMs used for weighting vector"}. This record does not assert independent reproduction. ### COBRA-UNI Lung ST Score: 95. Result ID: 69954beb3badfaffe63b1dd0. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"k":25,"Backbone":"UNI","Feature\_Fusion":"All four training FMs used for weighting vector"}. This record does not assert independent reproduction. ### COBRA-V2 Lung ST Score: 94.4. Result ID: 69954beb3badfaffe63b1dd2. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"k":25,"Backbone":"Virchow-2","Feature\_Fusion":"All four training FMs used for weighting vector"}. This record does not assert independent reproduction. ### MADELEINE Lung ST Score: 94.1. Result ID: 69954beb3badfaffe63b1dce. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"k":25}. This record does not assert independent reproduction. ### CONCH Lung ST Score: 92. Result ID: 69954beb3badfaffe63b1dc7. [Reporting paper]() Recorded evaluation configuration: {"k":25,"Pooling":"Mean over patch embeddings"}. This record does not assert independent reproduction. ### COBRA-CTP Lung ST Score: 90.2. Result ID: 69954beb3badfaffe63b1dcd. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"k":25,"Backbone":"CTransPath","Feature\_Fusion":"All four training FMs used for weighting vector"}. This record does not assert independent reproduction. ### CHIEF Lung ST Score: 85.2. Result ID: 69954beb3badfaffe63b1dcc. [Reporting paper]() Recorded evaluation configuration: {"k":25}. This record does not assert independent reproduction. ### Virchow2 Lung ST Score: 84.9. Result ID: 69954beb3badfaffe63b1dca. [Reporting paper]() [Method origin paper]() Recorded evaluation configuration: {"k":25,"Pooling":"Mean over patch embeddings"}. This record does not assert independent reproduction. ### GigaPath Lung ST Score: 83.7. Result ID: 69954beb3badfaffe63b1dc8. [Reporting paper]() Recorded evaluation configuration: {"k":25,"Pooling":"Mean over patch embeddings"}. This record does not assert independent reproduction. ### H-Optimus Lung ST Score: 83. Result ID: 69954beb3badfaffe63b1dc9. [Reporting paper]() Recorded evaluation configuration: {"k":25,"Pooling":"Mean over patch embeddings"}. This record does not assert independent reproduction. ### UNI Lung ST Score: 81.1. Result ID: 69954beb3badfaffe63b1dc6. [Reporting paper]() Recorded evaluation configuration: {"k":25,"Pooling":"Mean over patch embeddings"}. This record does not assert independent reproduction. ### Virchow Lung ST Score: 80.6. Result ID: 69954beb3badfaffe63b1dc4. [Reporting paper]() Recorded evaluation configuration: {"k":25,"Pooling":"Mean over patch embeddings"}. This record does not assert independent reproduction. ### GigaPath-SE Lung ST Score: 80.1. Result ID: 69954beb3badfaffe63b1dcb. [Reporting paper]() Recorded evaluation configuration: {"k":25,"Module":"Slide Encoder"}. This record does not assert independent reproduction. ### CTransPath Lung ST Score: 72.9. Result ID: 69954beb3badfaffe63b1dc5. [Reporting paper]() Recorded evaluation configuration: {"k":25,"Pooling":"Mean over patch embeddings"}. This record does not assert independent reproduction. Page 1 of 1. This is an index page, not the full collection.