Enzyme Commission classification on EC
61.9F1-macroBaseline
Evaluation Results
| Method | Links | |
|---|---|---|
| BaselineBackbone=ESM2-150M2026.05 | 61.9 | |
| Masked-pos (run 1)Backbone=ESM2-150M, Seeds=42/123/4562026.05 | 61.8 | |
| MLM-onlyBackbone=AMPLIFY-120M2026.05 | 60.9 | |
| Masked-pos (run 2)Backbone=ESM2-150M, Seeds=422026.05 | 60.5 | |
| BaselineBackbone=AMPLIFY-120M2026.05 | 59.7 | |
| All-pos MLM+JEPABackbone=ESM2-150M2026.05 | 59.4 | |
| Masked-posBackbone=AMPLIFY-120M2026.05 | 59.2 | |
| All-pos MLM+JEPABackbone=AMPLIFY-120M2026.05 | 59.1 | |
| BaselineBackbone=ESM2-35M2026.05 | 57.4 | |
| Masked-pos (AdamW)Backbone=ESM2-35M2026.05 | 56.7 | |
| MLM-onlyBackbone=ESM2-150M2026.05 | 56.2 | |
| Masked-pos (SGDm)Backbone=ESM2-35M2026.05 | 55.8 | |
| MLM+JEPA @90kTraining step=90k2026.05 | 55.6 | |
| MLM-onlyBackbone=ESM2-35M2026.05 | 55.4 | |
| MLM-onlyBackbone=Rand-Init-35M2026.05 | 45 | |
| ProteinBERT2-150M masked-pos2026.05 | 44.2 | |
| Masked-posBackbone=ProteinBERT2-35M2026.05 | 44 | |
| Masked-posBackbone=Rand-Init-35M2026.05 | 42.2 | |
| All-pos MLM+JEPABackbone=ESM2-35M2026.05 | 40.2 | |
| MLM-onlyBackbone=ProteinBERT2-35M2026.05 | 28.6 | |
| BaselineBackbone=ProteinBERT2-35M2026.05 | 27 | |
| All-pos MLM+JEPABackbone=ProteinBERT2-35M2026.05 | 20.3 | |
| All-pos MLM+JEPABackbone=Rand-Init-35M2026.05 | 19.4 | |
| BaselineBackbone=Rand-Init-35M2026.05 | 19.3 | |
| ESM2-150M rand-init MLM-only2026.05 | 16.5 | |
| JEPA-onlyBackbone=AMPLIFY-120M2026.05 | 15 | |
| JEPA-onlyBackbone=ESM2-150M2026.05 | 12.6 | |
| JEPA-onlyBackbone=Rand-Init-35M2026.05 | 12.4 | |
| JEPA-onlyBackbone=ESM2-35M2026.05 | 8.9 | |
| JEPA-onlyBackbone=ProteinBERT2-35M2026.05 | 3.6 |