Document-level phenotype concept recognition on Average BIOC-GS GSC-2024 ID-68
79.79Average F1 ScoreAutoPCRFT
Evaluation results
| Method | Links | ||
|---|---|---|---|
| AutoPCRFTCategory=Prompt Based, LLM Backend=Qwen3-30B-A3B-Instruct-2507, Evaluation Protocol=Fine-tuned2025.07 | 79.79 | — | |
| AutoPCRCategory=Prompt Based, LLM Backend=Qwen3-Next-80B-A3B-Instruct2025.07 | 79.62 | 1.67 | |
| PhenoBERTCategory=Neural2025.07 | 76.74 | 4 | |
| FastHPOCRCategory=Dictionary Based2025.07 | 76.36 | 3 | |
| PhenoTaggerCategory=Neural2025.07 | 76.02 | 3.67 | |
| PhenoTagger++Category=Neural2025.07 | 75.15 | 4.33 | |
| NCRCategory=Neural2025.07 | 72.33 | 5.67 | |
| REALCategory=Prompt Based, LLM Backend=GPT-4o-mini2025.07 | 67.82 | 6.67 | |
| NCBOCategory=Dictionary Based2025.07 | 67.39 | 7.33 | |
| OBOCategory=Dictionary Based2025.07 | 63.01 | 9 | |
| ClinPhenCategory=Dictionary Based2025.07 | 61.37 | 9.67 | |
| VanillaCategory=Prompt Based, LLM Backend=GPT-4o-mini2025.07 | 10.53 | 11 |