Document-level phenotype concept recognition on GSC 2024
99.33PrecisionNCBO
Evaluation results
| Method | Links | ||||
|---|---|---|---|---|---|
| NCBOCategory=Dictionary Based2025.07 | 99.33 | 52.26 | 68.49 | 7 | |
| FastHPOCRCategory=Dictionary Based2025.07 | 95.15 | 77.61 | 85.49 | 1 | |
| AutoPCRFTCategory=Prompt Based, LLM Backend=Qwen3-30B-A3B-Instruct-2507, Evaluation Protocol=Fine-tuned2025.07 | 91.62 | 76.69 | 83.5 | — | |
| PhenoBERTCategory=Neural2025.07 | 90.33 | 73.87 | 81.27 | 5 | |
| PhenoTagger++Category=Neural2025.07 | 89.38 | 76.7 | 82.55 | 3 | |
| AutoPCRCategory=Prompt Based, LLM Backend=Qwen3-Next-80B-A3B-Instruct2025.07 | 89.36 | 78.32 | 83.48 | 2 | |
| PhenoTaggerCategory=Neural2025.07 | 87.57 | 76.62 | 81.73 | 4 | |
| ClinPhenCategory=Dictionary Based2025.07 | 86.2 | 44.99 | 59.12 | 10 | |
| OBOCategory=Dictionary Based2025.07 | 85.98 | 52.4 | 65.12 | 8 | |
| NCRCategory=Neural2025.07 | 81.88 | 73.09 | 77.24 | 6 | |
| REALCategory=Prompt Based, LLM Backend=GPT-4o-mini2025.07 | 80.21 | 54.66 | 65.02 | 9 | |
| VanillaCategory=Prompt Based, LLM Backend=GPT-4o-mini2025.07 | 18.25 | 9.75 | 12.71 | 11 |