Document-level Phenotype Concept Recognition on BIOC-GS
84.57Precision (P)AutoPCR
Evaluation results
| Method | Links | ||||
|---|---|---|---|---|---|
| AutoPCRCategory=Prompt Based, LLM Backend=Qwen3-Next-80B-A3B-Instruct2025.07 | 84.57 | 67.44 | 75.04 | 1 | |
| AutoPCRFTCategory=Prompt Based, LLM Backend=Qwen3-30B-A3B-Instruct-2507, Evaluation Protocol=Fine-tuned2025.07 | 83.94 | 65.18 | 73.38 | — | |
| NCBOCategory=Dictionary Based2025.07 | 82.64 | 45.7 | 58.85 | 8 | |
| PhenoBERTCategory=Neural2025.07 | 76.53 | 53.97 | 63.3 | 6 | |
| REALCategory=Prompt Based, LLM Backend=GPT-4o-mini2025.07 | 76.47 | 60.27 | 67.41 | 3 | |
| OBOCategory=Dictionary Based2025.07 | 73.93 | 42.72 | 54.15 | 10 | |
| PhenoTaggerCategory=Neural2025.07 | 71.33 | 65.89 | 68.5 | 2 | |
| FastHPOCRCategory=Dictionary Based2025.07 | 70.92 | 59.77 | 64.87 | 5 | |
| PhenoTagger++Category=Neural2025.07 | 69.53 | 64.24 | 66.78 | 4 | |
| NCRCategory=Neural2025.07 | 65.54 | 57.62 | 61.32 | 7 | |
| ClinPhenCategory=Dictionary Based2025.07 | 64.78 | 51.16 | 57.17 | 9 | |
| VanillaCategory=Prompt Based, LLM Backend=GPT-4o-mini2025.07 | 4.42 | 3.48 | 3.89 | 11 |