Slide-level Clinical and Molecular Marker Prediction on CPTAC external validation cohorts (test)
99.2NSCLC Subtyping AUROCPRISM
Evaluation results
| Method | Links | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PRISMAggregation=Slide Encoder2024.11 | 99.2 | 87.6 | 70.7 | 78.2 | 52.9 | 92.2 | 84.2 | 64.5 | 79.1 | 59.9 | 67.2 | 54.6 | 52.2 | 52.1 | 66.2 | 70.9 | |
| COBRAAggregation=Slide Encoder2024.11 | 98.1 | 84 | 80 | 78.4 | 59.2 | 89.6 | 79.2 | 71.6 | 75.3 | 94.1 | 87.8 | 65.7 | 62.1 | 58.3 | 57.6 | 75.3 | |
| ConcatenatedAggregation=Concatenated mean embeddings2024.11 | 97.4 | 75.7 | 80.2 | 72.5 | 57.6 | 89.6 | 79.1 | 67.5 | 69.4 | 95 | 82.2 | 61.6 | 59.7 | 62 | 70.2 | 74.7 | |
| H-OptimusAggregation=Mean over patch embeddings2024.11 | 97.2 | 78.5 | 78.2 | 71.3 | 58.1 | 85.2 | 74.9 | 51.4 | 62.2 | 94.7 | 77.1 | 55.5 | 59.2 | 52.3 | 52.4 | 73.8 | |
| Ensemble PredictionAggregation=Average of predictions2024.11 | 97.2 | 77.2 | 78.5 | 73.3 | 59.5 | 87.6 | 77.2 | 65.6 | 65.4 | 94.7 | 78.9 | 62.5 | 64.1 | 60.5 | 64.5 | 73.3 | |
| GigaPathAggregation=Mean over patch embeddings2024.11 | 96.6 | 71.3 | 75.7 | 75.4 | 56.9 | 85.7 | 75.9 | 64.5 | 62.8 | 93.3 | 77.5 | 61.7 | 56.1 | 53.4 | 63.2 | 73.6 | |
| CONCHAggregation=Mean over patch embeddings2024.11 | 96.5 | 66 | 62 | 74.6 | 59 | 85.3 | 80.3 | 58.8 | 62.3 | 79.2 | 57.5 | 67.3 | 55.7 | 59.4 | 63.5 | 71 | |
| UNIAggregation=Mean over patch embeddings2024.11 | 95.8 | 69.4 | 70.1 | 73.9 | 50.7 | 87.4 | 74.9 | 64 | 59.5 | 89 | 73 | 62 | 63.5 | 62.2 | 62.4 | 71.5 | |
| Virchow2Aggregation=Mean over patch embeddings2024.11 | 95.8 | 79.6 | 78.3 | 72.1 | 60.9 | 89.2 | 79.3 | 71.3 | 61.8 | 94.9 | 81.6 | 63 | 59.3 | 56.3 | 62.7 | 74.1 | |
| MADELEINEAggregation=Slide Encoder2024.11 | 94 | 72.2 | 64 | 72 | 51.9 | 80.1 | 73.7 | 66.7 | 68.6 | 68.1 | 54.2 | 60.3 | 58.9 | 50.5 | 59.5 | 65.4 | |
| CHIEFAggregation=Slide Encoder2024.11 | 93.6 | 64.2 | 62.8 | 73.4 | 50.1 | 83 | 77.5 | 63.4 | 75.1 | 63.6 | 58 | 58.4 | 48.2 | 56.6 | 60.5 | 66.1 | |
| GigaPath-SEAggregation=Slide Encoder2024.11 | 90.9 | 67 | 65.4 | 73.7 | 57.1 | 72.9 | 71.9 | 55.4 | 63.6 | 66.2 | 56.7 | 54.6 | 51.3 | 45.8 | 53.2 | 63.2 | |
| VirchowAggregation=Mean over patch embeddings2024.11 | 89.4 | 76.5 | 60.3 | 70.7 | 54.3 | 66.9 | 60.5 | 51.3 | 55.7 | 62.1 | 65 | 58.2 | 53.9 | 70.6 | 68.1 | 65.4 | |
| CTransPathAggregation=Mean over patch embeddings2024.11 | 87.2 | 62.8 | 59.3 | 70.1 | 52.4 | 68.1 | 66.5 | 48.6 | 56.3 | 76.1 | 59.8 | 59.8 | 55.9 | 52.5 | 56.3 | 62.1 |