Molecular Profile Prediction on CPTAC
98LUAD ST ScorePRISM
Evaluation Results
| Method | Links | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PRISMk=10, Evaluation Protocol=Few-shot, Training Dataset=TCGA2024.11 | 98 | 35.8 | 45.4 | 69.2 | 85.8 | 76.1 | 19.9 | 50.8 | 25.5 | 56.8 | 56.3 | |
| COBRA-HOk=10, Evaluation Protocol=Few-shot, Training Dataset=TCGA, Backbone=H-Optimus-02024.11 | 93.6 | 42.3 | 56.9 | 69.1 | 84.1 | 68.5 | 16.6 | 65.3 | 31.3 | 56.3 | 58.4 | |
| COBRA-UNIk=10, Evaluation Protocol=Few-shot, Training Dataset=TCGA, Backbone=UNI2024.11 | 92.5 | 32.6 | 53.6 | 71.4 | 85.8 | 71.1 | 17.1 | 60.5 | 34.5 | 57.2 | 57.6 | |
| COBRA-V2k=10, Evaluation Protocol=Few-shot, Training Dataset=TCGA, Backbone=Virchow-22024.11 | 92.1 | 30.3 | 53.4 | 70.9 | 87.3 | 72.1 | 21 | 67.7 | 42.5 | 57.3 | 59.5 | |
| MADELEINEk=10, Evaluation Protocol=Few-shot, Training Dataset=TCGA2024.11 | 90.7 | 26.9 | 44.5 | 63.6 | 85.5 | 72 | 19.9 | 49.6 | 30.7 | 58.8 | 54.2 | |
| CONCHk=10, Evaluation Protocol=Few-shot, Training Dataset=TCGA2024.11 | 86.6 | 27.3 | 40.9 | 62.8 | 84.9 | 73.9 | 15.7 | 44.7 | 31.1 | 59.6 | 52.8 | |
| COBRA-CTPk=10, Evaluation Protocol=Few-shot, Training Dataset=TCGA, Backbone=CTransPath2024.11 | 83.3 | 28.1 | 46 | 66.2 | 79.1 | 68.4 | 16.2 | 50.5 | 29 | 54.2 | 52.1 | |
| GigaPathk=10, Evaluation Protocol=Few-shot, Training Dataset=TCGA2024.11 | 80 | 24.7 | 51.2 | 62 | 83.5 | 69.7 | 18 | 59.1 | 31.9 | 58.9 | 53.9 | |
| Virchow-2k=10, Evaluation Protocol=Few-shot, Training Dataset=TCGA2024.11 | 77.6 | 25 | 48.9 | 62.4 | 86.5 | 74 | 18.2 | 62.1 | 34.5 | 58 | 54.7 | |
| Virchowk=10, Evaluation Protocol=Few-shot, Training Dataset=TCGA2024.11 | 77.4 | 26.3 | 40.3 | 59.3 | 74.4 | 66.6 | 13.3 | 35.9 | 19.5 | 55.5 | 46.9 | |
| H-Optimus-0k=10, Evaluation Protocol=Few-shot, Training Dataset=TCGA2024.11 | 76.9 | 32.7 | 48.6 | 61.2 | 82.7 | 68.3 | 14.8 | 59.6 | 31 | 58.5 | 53.4 | |
| CHIEFk=10, Evaluation Protocol=Few-shot, Training Dataset=TCGA2024.11 | 76.4 | 26.6 | 45 | 61.6 | 81.6 | 75.1 | 17.6 | 49.1 | 26.1 | 56.5 | 51.6 | |
| UNIk=10, Evaluation Protocol=Few-shot, Training Dataset=TCGA2024.11 | 76.2 | 25.6 | 48.7 | 62.9 | 82.5 | 73.1 | 15.4 | 55.7 | 28.6 | 59.2 | 52.8 | |
| GigaPath-SEk=10, Evaluation Protocol=Few-shot, Training Dataset=TCGA2024.11 | 72.6 | 23.6 | 43.6 | 59.7 | 74.7 | 64.9 | 15.4 | 33.6 | 19.9 | 52.7 | 46.1 | |
| CTransPathk=10, Evaluation Protocol=Few-shot, Training Dataset=TCGA2024.11 | 64.1 | 21.2 | 40.6 | 57.7 | 78.9 | 70.1 | 13.7 | 43.1 | 25.9 | 57.1 | 47.2 |