Classification on CPTAC 1.0 (k=25)
93.4LUNG STPRISM
Evaluation Results
| Method | Links | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PRISMk=25, Training Dataset=TCGA, Weighting Vector Generation Method=embeddings of all four training FMs used2024.11 | 93.4 | 49 | 57.6 | 63.8 | 66 | 55.7 | 21.1 | 49.2 | 29.5 | 45.6 | 53.1 | |
| COBRA-H0k=25, Training Dataset=TCGA, Patch Embedding Aggregation Strategy=mean over patch embeddings, Base Model=H-Optimus-02024.11 | 85.2 | 42.9 | 58.4 | 50.2 | 65.8 | 49.8 | 13.2 | 52.5 | 31 | 30.9 | 48 | |
| MADELEINEk=25, Training Dataset=TCGA2024.11 | 85.1 | 37.9 | 45 | 50.3 | 57.2 | 40 | 23.2 | 47.5 | 24.8 | 42.5 | 45.4 | |
| COBRA-V2k=25, Training Dataset=TCGA, Patch Embedding Aggregation Strategy=mean over patch embeddings, Base Model=Virchow-22024.11 | 84.9 | 40.7 | 56.9 | 53.8 | 73.2 | 55.7 | 18.5 | 58 | 38.6 | 24.4 | 50.5 | |
| COBRA-UNIk=25, Training Dataset=TCGA, Patch Embedding Aggregation Strategy=mean over patch embeddings, Base Model=UNI2024.11 | 83.9 | 40.4 | 56.9 | 53.5 | 74.2 | 62.2 | 18 | 50.2 | 33.3 | 24.5 | 49.7 | |
| CONCHk=25, Training Dataset=TCGA2024.11 | 81.8 | 37.9 | 44.7 | 42.6 | 50.3 | 52.4 | 18.9 | 49.9 | 29 | 46.8 | 45.4 | |
| COBRA-CTPk=25, Training Dataset=TCGA, Patch Embedding Aggregation Strategy=mean over patch embeddings, Base Model=CTransPath2024.11 | 79.6 | 33.9 | 54.2 | 48.4 | 75.1 | 58.4 | 14.1 | 47.9 | 26 | 33.7 | 47.1 | |
| CHIEFk=25, Training Dataset=TCGA2024.11 | 76.1 | 33.9 | 52.8 | 45.1 | 68.2 | 53.5 | 18.1 | 42.7 | 24.5 | 34.4 | 44.9 | |
| Virchow2k=25, Training Dataset=TCGA2024.11 | 71.4 | 30.7 | 52.6 | 46.1 | 71.6 | 51.5 | 16.9 | 54.5 | 29.3 | 30.6 | 45.5 | |
| H-Optimusk=25, Training Dataset=TCGA2024.11 | 65.4 | 27.4 | 46.6 | 42.6 | 66.2 | 49.3 | 13.5 | 43.7 | 27.1 | 25.1 | 40.7 | |
| UNIk=25, Training Dataset=TCGA2024.11 | 64.5 | 27.7 | 49.2 | 45.6 | 68.3 | 62 | 18 | 47.4 | 26.9 | 45.2 | 45.5 | |
| GigaPathk=25, Training Dataset=TCGA2024.11 | 64.4 | 22.1 | 54.1 | 36.4 | 67.9 | 49.5 | 19.5 | 39.9 | 27 | 37.6 | 41.8 | |
| GigaPath-SEk=25, Training Dataset=TCGA, Patch Embedding Aggregation Strategy=mean over patch embeddings2024.11 | 64.4 | 21.1 | 42.4 | 44.5 | 48.9 | 43.1 | 20.2 | 36.3 | 25 | 50.9 | 39.7 | |
| CTransPathk=25, Training Dataset=TCGA2024.11 | 64.1 | 25.5 | 47.3 | 34.7 | 60 | 49.1 | 15.6 | 41.2 | 25.7 | 42.3 | 40.5 | |
| Virchowk=25, Training Dataset=TCGA2024.11 | 62.8 | 26.7 | 46.7 | 38.2 | 40.4 | 50.2 | 17 | 44.1 | 26 | 41.8 | 39.4 |