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Compare scientific models products for capabilities, deployment, pricing, and enterprise readiness. Ranked using verified practitioner feedback, product research, and enterprise trust signals.
| Company | Description | Matching products |
|---|---|---|
| GPMeta | A GPU-accelerated method for ultrarapid pathogen identification from metagenomic sequences. | |
| GPUGRID | Volunteer computing project that harnesses GPU power for scientific research including drug discovery, protein folding, and molecular dynamics. | |
| GROMACS | GROMACS is a free and open-source software suite for high-performance molecular dynamics and output analysis. | |
| GTC | Open-source scientific code developed collaboratively by an international team with over 100 developers and users in the ITER partnership, led by Principal Investigator Zhihong Lin at the University of California, Irvine. GTC is a massively parallel, particle-in-cell code for turbulence simulation in support of the burning plasma experiment ITER. |
| Gaussian | Develops computational chemistry software that predicts energies, molecular structures, and vibrational frequencies of molecular systems. |
| Godela | Godela is bringing AI-powered physics intelligence to the physical world. Its models learn the laws of the physical world at every scale, from a single component to the universe itself, unlocking discoveries that once took lifetimes. |
| HALMD | Project behind HAL's MD package, a molecular dynamics framework maintained and developed by Felix Höfling, initially written with Peter Colberg, with contributions from Nicolas Höft and Daniel Kirchner. |
| Harmony-GPU | GPU implementation of Harmony, a unified framework for data visualization, analysis, and interpretation of scRNA-seq data measured across discrete time points. |
| HiPSTAR | High-Performance Solver for Turbulence and Aeroacoustic Research (HiPSTAR) is CFD software for compressible equations solved on general curvilinear coordinates, with the option of also solving curvilinear cylindrical coordinates. |
| IMPETUS Afea | Developer of the IMPETUS Afea Solver system for non-linear explicit finite element simulations, predicting large deformations of structures and components exposed to extreme loading conditions. |
| Imaging and Modeling Unit, Institut Pasteur | Research unit associated with ANNA-PALM, a computational method for accelerating single molecule localization microscopy with deep learning. |
| JMAG | Simulation software for electric device design and development that accurately models complex electromagnetic phenomena in a wide range of equipment. Released in 1983, used in industries and universities worldwide. |
| JSC Top Systems | Develops and sells the T-FLEX product family of integrated software solutions for product design, manufacturing, and data management. |
| LATTE | Open source density functional tight binding molecular dynamics code. |
| LoFreq | A variant-caller project for inferring SNVs and indels from next-generation sequencing data, using base-call qualities and other sources of errors inherent in sequencing. |
| MEGADOCK | FFT-based protein-protein docking software developed at Tokyo Institute of Technology for heterogeneous supercomputers, enabling large-scale interactome prediction. |
| MIDAS IT Co., Ltd. | Provides structural analysis and FEM analysis software specialized in architecture, soil, ground, and machinery fields. |
| MILC | MILC is presented under the USQCD (US Lattice Quantum Chromodynamics) umbrella, providing Lattice Quantum Chromodynamics simulation codes. The page is hosted at usqcd-software.github.io, with Carleton DeTar identified as maintainer, affiliated with the University of Utah physics department. |
| MOVEdot | AI agents for physical engineering that turn telemetry, simulations, models, and documents into answers for engineering teams. |
| MUMmer GPU | MUMmer GPU is a high-throughput local sequence alignment program |
| Max Planck Institute of Biophysics | Research institute and member of the Max-Planck-Gesellschaft. The Department of Theoretical Biophysics develops scientific software including BioEM. |
| MetaCache | Classification system for mapping genomic sequences (short reads, long reads, contigs) from metagenomic samples to their most likely taxon of origin. |
| Metariver Technology | CAE solution provider for engineering technology using CUDA and GPU computing. |
| MrBayes | MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models, using Markov chain Monte Carlo (MCMC) methods to estimate the posterior distribution of model parameters. |
| MuSE | Somatic point mutation caller for tumor-normal paired samples in next-generation sequencing data, developed at the Department of Bioinformatics and Computational Biology at MD Anderson Cancer Center. Based on a Markov substitution model for molecular evolution with a sample-specific error model. |
| NVIDIA (NVLabs) | Company behind NVBIO, a GPU-accelerated bioinformatics library. | nvBowtie 2 more |
| NYB | AI-first drug discovery and nutraceuticals company that advances therapeutics and nutraceuticals through an integrated discovery platform. |
| Neural Concept | Neural Concept is the leading AI-first engineering platform for product development, integrating 3D deep learning and generative AI into engineering design workflows. |
| Octopus | Scientific program for ab initio virtual experimentation, developed by the Theory Department of the Max Planck Institute for the Structure and Dynamics of Matter. Supports DFT, TDDFT, Maxwell-TDDFT, and QEDFT calculations. |
| Ohm | Frontier AI platform for engineering test labs, targeting Fortune 100 hardware engineering teams across automotive, aerospace, battery, data centers, and wearables/consumer electronics. |
| OpenMOPAC | Open-source project maintaining MOPAC (Molecular Orbital PACkage), a semiempirical quantum chemistry package. MOPAC is actively maintained and curated by the Molecular Sciences Software Institute (MolSSI). |
| OpenModelica | Open-source Modelica-based modeling, compilation, and simulation environment intended for industrial and academic usage. Long-term development is supported by the non-profit Open Source Modelica Consortium (OSMC). |
| Oqton | Software provider for additive manufacturing, operating a cloud-based, AI-enabled Manufacturing Operating System (MOS) platform. Acquired by 3D Systems in November 2021 and operates as an independent organization. |
| OriGen AI | New York City-based software developer offering AI solutions for the energy industry under the Proteus platform brand, providing reservoir simulation, optimization, and forecasting capabilities for enterprise customers. |
| Osium AI | AI-powered platform enabling industry leaders to accelerate development of sustainable and high-performance materials and chemicals. |
| PICKSC | Center that develops, maintains, and improves several production plasma simulation codes, including OSIRIS, QuickPIC, UPIC-EMMA, and OSHUN. |
| PIConGPU | A fully relativistic, manycore, 3D3V particle-in-cell (PIC) code for plasma physics simulations implementing various numerical schemes for the PIC cycle. |
| Piramidal Inc. | Piramidal Inc. provides a foundation model for the brain, aiming to bridge in-vivo biological data with in-silico intelligence. |
| PowerGrid | Open source toolkit for MR image reconstructions using GPUs and distributed memory, developed by the Magnetic Resonance Functional Imaging Lab (MRFIL) at the Beckman Institute, University of Illinois at Urbana-Champaign. |
| Project Chrono | Project Chrono is an open-source, platform-independent, physics-based modelling and simulation infrastructure implemented in C++. A community project led by the University of Wisconsin-Madison and University of Parma-Italy, hosted on GitHub. |
| Prometech Software, Inc. | Developer and operator of Granuleworks, DEM-based simulation software for granular and powder materials. Member of the Prometech Group. |
| PyFR | Open-source platform for fast, robust and accurate Scale-Resolving Simulations of industrial flow problems, released under a 3-Clause BSD License. |
| Q-Chem, Inc. | Developer of the Q-Chem computational chemistry software platform with an extensive set of features for HPC clusters. |
| QMCPACK | Open-source production level many-body ab initio Quantum Monte Carlo code for computing the electronic structure of atoms, molecules, and solids. Primary support is from the U.S. Department of Energy, Office of Science, Basic Energy Sciences, Materials Sciences and Engineering Division. |
| Qedma | Israeli quantum computing software company developing error mitigation and suppression software for quantum processors. |
| RAMSES | Open source code to model astrophysical systems, featuring self-gravitating, magnetised, compressible, radiative fluid flows based on Adaptive Mesh Refinement (AMR) on a fully-threaded graded octree. |
| RELION | RELION (REgularised LIkelihood OptimisatioN) is a stand-alone computer program for 3D reconstruction and 2D class averaging in electron cryo-microscopy (cryo-EM), hosted at the MRC Laboratory of Molecular Biology (LMB), Cambridge. |
| RIKEN Advanced Institute for Computational Science | Operates the RIKEN AICS Software Center, founded in 2017 to promote software developed at AICS and available to K computer users since April 2013. |
| RMG | RMG is a density functional theory (DFT) based electronic structure code that uses real space grids to represent wavefunctions, charge densities, and ionic potentials. Designed for scalability, it has been run successfully on systems with thousands of nodes (including GPU nodes) and hundreds of thousands of CPU cores, reaching 1 petaflops on 3,872 Cray XK nodes. |
| Racon | Standalone consensus module for raw de novo genome assembly of long uncorrected reads, developed by lbcb-sci and hosted on GitHub. |