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LoFreq*
A fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data.
What is LoFreq*?
A fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. Runs on almost any type of aligned sequencing data (Illumina, IonTorrent, PacBio) without machine- or sequencing-technology-dependent thresholds. Automatically adapts to coverage and sequencing quality changes. Each variant call is assigned a p-value for rigorous false positive control.
Product typeScientific Models
Pricing ·
Deployment
APINot available
What teams use LoFreq* for
Variant calling for next-generation sequencing data
SNV and indel inference
Analysis of viral/quasispecies, bacterial, metagenomics, or somatic data
Integrations and access
Platforms, integrations, and language support vary by plan and region. Confirm final requirements with the vendor.
Platforms
IntegrationsAPI and webhooks
Languages
Support
What reviewers say
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Enterprise readiness
Compliance claims are normalized from current vendor documentation and independently reviewed by SOTA2.
Data retention:
Benchmarks and comparisons
Independent benchmarksStructured task results are being verified.
Side-by-side comparisonsComparison workspaces will be available in a later release.
