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LoFreq*

Scientific models · by LoFreq

A fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data.

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What it does

A fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. Runs on almost any type of aligned sequencing data (Illumina, IonTorrent, PacBio) without machine- or sequencing-technology-dependent thresholds. Automatically adapts to coverage and sequencing quality changes. Each variant call is assigned a p-value for rigorous false positive control.

  • Variant calling for next-generation sequencing data
  • SNV and indel inference
  • Analysis of viral/quasispecies, bacterial, metagenomics, or somatic data
Category
Scientific models
Public API
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Not yet disclosed: deployment options, platforms, languages and support channels.

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