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Sparse regression on Simulated GWAS Mixed LD 50,000 SNPs, 25 significant SNPs (Sample size 1000)

25,000Correct Identification RatePBR
2,1988,117.7514,037.519,957.25Oct 16, 2021

Evaluation results

MethodLinks
PBRHyper-parameter tuning=Out-of-sample Mean Square Error (MSE)2021.1025,0000
ENetHyper-parameter tuning=Cross-validation with minimum MSE+1SE2021.1018,147119
LassoHyper-parameter tuning=Cross-validation with minimum MSE+1SE2021.103,0750