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Sparse regression on Simulated GWAS High LD 50,000 SNPs, 25 significant SNPs (Sample size 100)

251.52True PositivesPBR
11.789674.0273136.265198.5027Oct 16, 2021

Evaluation results

MethodLinks
PBRHyper-parameter tuning=Out-of-sample Mean Square Error (MSE)2021.10251.5211.03
ENetHyper-parameter tuning=Cross-validation with minimum MSE+1SE2021.10203.4741.41
LassoHyper-parameter tuning=Cross-validation with minimum MSE+1SE2021.1021.0110.93