Cell Type Annotation on MS
86.75AccuracyscANVI
Evaluation results
| Method | Links | ||
|---|---|---|---|
| scANVITool=scvi-tools==1.1.0, Latent space dimension=322025.04 | 86.75 | 74.24 | |
| SeuratVersion=R v4.4.0, Reduction=Standard PCA, Backbone=Random Forest2025.04 | 86 | 73.35 | |
| scGPTTraining Setup=Supervised fine-tuning with MLP classification head2025.04 | 84.71 | 66.3 | |
| scVITool=scvi-tools==1.1.0, Latent space dimension=322025.04 | 77.9 | 63.57 | |
| scFoundationTraining Setup=Supervised fine-tuning with MLP classification head2025.04 | 77.63 | 68.12 | |
| GeneFormerTraining Setup=Supervised fine-tuning with MLP classification head2025.04 | 76.5 | 62.2 | |
| HVGSelected Genes=top 2,000 highly variable genes2025.04 | 70.55 | 54.03 | |
| GeneMambaEpochs=100, Batch size=5122025.04 | 68.25 | 53.42 | |
| GeneMambaTraining Setup=Supervised fine-tuning with MLP classification head2025.04 | 68.25 | 53.42 |