Cell type annotation on hPancreas
97.7AccuracyHVG
Evaluation results
| Method | Links | ||
|---|---|---|---|
| HVGSelected Genes=top 2,000 highly variable genes2025.04 | 97.7 | 70.29 | |
| GeneMambaEpochs=100, Batch size=512, Optimizer=Adam, Learning rate=0.0012025.04 | 97.13 | 77.1 | |
| GeneMambaTraining Setup=Supervised fine-tuning with MLP classification head2025.04 | 97.13 | 77.1 | |
| scGPTTraining Setup=Supervised fine-tuning with MLP classification head2025.04 | 97.1 | 76.32 | |
| SeuratVersion=R v4.4.0, Reduction=Standard PCA, Backbone=Random Forest2025.04 | 96.68 | 73.46 | |
| GeneFormerTraining Setup=Supervised fine-tuning with MLP classification head2025.04 | 96.65 | 74.5 | |
| scANVITool=scvi-tools==1.1.0, Latent space dimension=32, Classification head=2-layer MLP, Activation=ReLU2025.04 | 96.62 | 70.23 | |
| scFoundationTraining Setup=Supervised fine-tuning with MLP classification head2025.04 | 96.02 | 71.01 | |
| scVITool=scvi-tools==1.1.0, Latent space dimension=32, Classification head=2-layer MLP, Activation=ReLU2025.04 | 95.97 | 66.31 |