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ResearchFormerly WizWand

Biomedical Entity Linking on BC5CDR

94.7Accuracy @1BioBART + ANGEL_FT
71.09277.22183.3589.479Aug 29, 2024
Updated 8mo ago

Evaluation results

MethodLinks
BioBART + ANGEL_FTBackbone=BioBART, Protocol=fine-tuning2024.0894.7
GenBioEL + ANGEL_PT+FTBackbone=GenBioEL, Protocol=pre-training and fine-tuning2024.0894.5
GenBioEL + ANGEL_FTBackbone=GenBioEL, Protocol=fine-tuning2024.0894.4
Prompt-BioELModel Category=Similarity-based BioEL & Re-ranking2024.0894.3
ResCNNModel Category=Similarity-based BioEL & Re-ranking2024.0894
BART + ANGEL_FTBackbone=BART, Protocol=fine-tuning2024.0893.6
BioBARTSource=reproduced, Model Category=Generative BioEL2024.0893.5
BioSYNModel Category=Similarity-based BioEL & Re-ranking2024.0893.3
BioBARTSource=reported, Model Category=Generative BioEL2024.0893.3
GenBioELSource=reported, Model Category=Generative BioEL2024.0893.3
GenBioELSource=reproduced, Model Category=Generative BioEL2024.0893.1
BARTSource=reproduced, Model Category=Generative BioEL2024.0893
BARTSource=reported, Model Category=Generative BioEL2024.0892.5
SapBERTModel Category=Similarity-based BioEL & Re-ranking2024.0888.6
KRISSBERTModel Category=Similarity-based BioEL & Re-ranking2024.0872