Biomedical Entity Linking on BC5CDR
94.7Accuracy @1BioBART + ANGEL_FT
Evaluation Results
| Method | Links | |
|---|---|---|
| BioBART + ANGEL_FTBackbone=BioBART, Protocol=fine-tuning2024.08 | 94.7 | |
| GenBioEL + ANGEL_PT+FTBackbone=GenBioEL, Protocol=pre-training and fine-tuning2024.08 | 94.5 | |
| GenBioEL + ANGEL_FTBackbone=GenBioEL, Protocol=fine-tuning2024.08 | 94.4 | |
| Prompt-BioELModel Category=Similarity-based BioEL & Re-ranking2024.08 | 94.3 | |
| ResCNNModel Category=Similarity-based BioEL & Re-ranking2024.08 | 94 | |
| BART + ANGEL_FTBackbone=BART, Protocol=fine-tuning2024.08 | 93.6 | |
| BioBARTSource=reproduced, Model Category=Generative BioEL2024.08 | 93.5 | |
| BioSYNModel Category=Similarity-based BioEL & Re-ranking2024.08 | 93.3 | |
| BioBARTSource=reported, Model Category=Generative BioEL2024.08 | 93.3 | |
| GenBioELSource=reported, Model Category=Generative BioEL2024.08 | 93.3 | |
| GenBioELSource=reproduced, Model Category=Generative BioEL2024.08 | 93.1 | |
| BARTSource=reproduced, Model Category=Generative BioEL2024.08 | 93 | |
| BARTSource=reported, Model Category=Generative BioEL2024.08 | 92.5 | |
| SapBERTModel Category=Similarity-based BioEL & Re-ranking2024.08 | 88.6 | |
| KRISSBERTModel Category=Similarity-based BioEL & Re-ranking2024.08 | 72 |