Biomedical Entity Linking on AAP
90.2Accuracy@1GenBioEL + ANGEL_PT+FT
Evaluation results
| Method | Links | |
|---|---|---|
| GenBioEL + ANGEL_PT+FTBackbone=GenBioEL, Protocol=pre-training and fine-tuning2024.08 | 90.2 | |
| BioBART + ANGEL_FTBackbone=BioBART, Protocol=fine-tuning2024.08 | 89.9 | |
| GenBioEL + ANGEL_FTBackbone=GenBioEL, Protocol=fine-tuning2024.08 | 89.9 | |
| Prompt-BioELModel Category=Similarity-based BioEL & Re-ranking2024.08 | 89.7 | |
| BART + ANGEL_FTBackbone=BART, Protocol=fine-tuning2024.08 | 89.5 | |
| BioBARTSource=reported, Model Category=Generative BioEL2024.08 | 89.4 | |
| GenBioELSource=reported, Model Category=Generative BioEL2024.08 | 89.3 | |
| BioBARTSource=reproduced, Model Category=Generative BioEL2024.08 | 89.3 | |
| GenBioELSource=reproduced, Model Category=Generative BioEL2024.08 | 89.3 | |
| SapBERTModel Category=Similarity-based BioEL & Re-ranking2024.08 | 89 | |
| BARTSource=reported, Model Category=Generative BioEL2024.08 | 88.8 | |
| BARTSource=reproduced, Model Category=Generative BioEL2024.08 | 88.7 | |
| BioSYNModel Category=Similarity-based BioEL & Re-ranking2024.08 | 86.5 | |
| KRISSBERTModel Category=Similarity-based BioEL & Re-ranking2024.08 | 83.1 | |
| ResCNNModel Category=Similarity-based BioEL & Re-ranking2024.08 | 77.4 |