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Papers Benchmarks Datasets Tasks

Protein Function Prediction research benchmarks · SOTA2 Research

Protein Function Prediction

Benchmarks

Dataset NameSOTA MethodSort

Dataset NameSOTA methodMetricTrendResultsLast Updated

100ROC-AUC

58

Jun 9, 2026

PPI full-shot (test)

81.91ROC-AUC

25

May 18, 2026

PPI 50-shot (test)

54.03ROC-AUC

15

Feb 26, 2026

PPI 100-shot (test)

54.66ROC-AUC

15

Feb 26, 2026

PPI 40 tasks (test)

Meta-Parameterized PT

78.6Mean AUC

13

Feb 26, 2026

Mol-Instructions Protein-oriented

48.6ROUGE-L

11

Feb 26, 2026

Protein Function Prediction 10 held-out tasks (test)

Meta-Parameterized PT

0.77AUC

11

Feb 26, 2026

Popular datasets

PPI Mol-Instructions Protein Function Prediction

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