Protein function prediction on PPI (test)
100ROC-AUCN2V-NLP
Evaluation Results
| Method | Links | |
|---|---|---|
| N2V-NLPInput Data=PPI + expression data2026.06 | 100 | |
| EssentialGINInput Data=PPI + expression data2026.06 | 100 | |
| EssentialGINInput Data=PPI + subcellular localization2026.06 | 100 | |
| EssentialGINInput Data=PPI2026.06 | 93.37 | |
| EssentialGINInput Data=PPI + orthology data2026.06 | 88.97 | |
| EPGATInput Data=PPI2026.06 | 88.58 | |
| SUPTsoftPre-training Strategy=AttrMasking2024.02 | 81.91 | |
| SUPThardPre-training Strategy=AttrMasking2024.02 | 81.9 | |
| GPFPre-training Strategy=AttrMasking2024.02 | 81.47 | |
| GPF-plusPre-training Strategy=AttrMasking2024.02 | 81.43 | |
| SUPTsoftPre-training Strategy=ContextPred2024.02 | 80.86 | |
| SUPThardPre-training Strategy=ContextPred2024.02 | 80.85 | |
| GPF-plusPre-training Strategy=ContextPred2024.02 | 80.28 | |
| GPFPre-training Strategy=ContextPred2024.02 | 80.21 | |
| SUPThardPre-training Strategy=EdgePred2024.02 | 80.2 | |
| SUPTsoftPre-training Strategy=EdgePred2024.02 | 80.19 | |
| GPFPre-training Strategy=EdgePred2024.02 | 79.96 | |
| GPF-plusPre-training Strategy=EdgePred2024.02 | 79.88 | |
| SUPThardPre-training Strategy=Infomax2024.02 | 79.64 | |
| SUPTsoftPre-training Strategy=Infomax2024.02 | 79.45 | |
| GPFPre-training Strategy=AttrMasking2022.09 | 78.91 | |
| GPF-plusPre-training Strategy=AttrMasking2022.09 | 78.9 | |
| GPFPre-training Strategy=Infomax2024.02 | 78.87 | |
| GPF-plusPre-training Strategy=Infomax2024.02 | 78.85 | |
| GPF-plusPre-training Strategy=ContextPred2022.09 | 77.71 | |
| GPFPre-training Strategy=ContextPred2022.09 | 77.42 | |
| GPF-plusPre-training Strategy=Infomax2022.09 | 77.03 | |
| GPFPre-training Strategy=Infomax2022.09 | 77.02 | |
| GPF-plusPre-training Strategy=EdgePred2022.09 | 77 | |
| GPFPre-training Strategy=EdgePred2022.09 | 76.98 | |
| GPPT (w/o ol)Pre-training Strategy=EdgePred2022.09 | 76.85 | |
| GPPTw/o olPre-training Strategy=EdgePred2024.02 | 76.85 | |
| EPGATInput Data=PPI + orthology data2026.06 | 76.57 | |
| FTPre-training Strategy=AttrMasking2022.09 | 73.93 | |
| FTPre-training Strategy=AttrMasking2024.02 | 73.93 | |
| EPGATInput Data=PPI + subcellular localization2026.06 | 72.57 | |
| EPGATInput Data=PPI + expression data2026.06 | 72.32 | |
| FTPre-training Strategy=ContextPred2022.09 | 72.1 | |
| FTPre-training Strategy=ContextPred2024.02 | 72.1 | |
| FTPre-training Strategy=EdgePred2022.09 | 71.54 | |
| FTPre-training Strategy=EdgePred2024.02 | 71.54 | |
| FTPre-training Strategy=Infomax2022.09 | 71.29 | |
| FTPre-training Strategy=Infomax2024.02 | 71.29 | |
| SUPTsoftPre-training Strategy=GCL2024.02 | 69.57 | |
| SUPThardPre-training Strategy=GCL2024.02 | 68.59 | |
| DCInput Data=PPI2026.06 | 68.07 | |
| GPFPre-training Strategy=GCL2024.02 | 67.91 | |
| GPF-plusPre-training Strategy=GCL2022.09 | 67.89 | |
| FTPre-training Strategy=GCL2022.09 | 67.76 | |
| FTPre-training Strategy=GCL2024.02 | 67.76 | |
| GPFPre-training Strategy=GCL2022.09 | 67.6 | |
| GPF-plusPre-training Strategy=GCL2024.02 | 66.71 | |
| N2V-NLPInput Data=PPI2026.06 | 65.8 | |
| MLPInput Data=PPI2026.06 | 58.95 | |
| GPPTPre-training Strategy=EdgePred2022.09 | 56.23 | |
| GPPTPre-training Strategy=EdgePred2024.02 | 56.23 | |
| GraphPromptPre-training Strategy=EdgePred2022.09 | 49.48 | |
| GraphPromptPre-training Strategy=EdgePred2024.02 | 49.48 |