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Protein function prediction on PPI (test)

100ROC-AUCN2V-NLP
47.459261.099674.7488.3804Sep 30, 2022May 12, 2023Dec 22, 2023Aug 2, 2024Mar 14, 2025Oct 24, 2025Jun 5, 2026
Updated 4mo ago

Evaluation results

MethodLinks
N2V-NLPInput Data=PPI + expression data2026.06100
EssentialGINInput Data=PPI + expression data2026.06100
EssentialGINInput Data=PPI + subcellular localization2026.06100
EssentialGINInput Data=PPI2026.0693.37
EssentialGINInput Data=PPI + orthology data2026.0688.97
EPGATInput Data=PPI2026.0688.58
SUPTsoftPre-training Strategy=AttrMasking2024.0281.91
SUPThardPre-training Strategy=AttrMasking2024.0281.9
GPFPre-training Strategy=AttrMasking2024.0281.47
GPF-plusPre-training Strategy=AttrMasking2024.0281.43
SUPTsoftPre-training Strategy=ContextPred2024.0280.86
SUPThardPre-training Strategy=ContextPred2024.0280.85
GPF-plusPre-training Strategy=ContextPred2024.0280.28
GPFPre-training Strategy=ContextPred2024.0280.21
SUPThardPre-training Strategy=EdgePred2024.0280.2
SUPTsoftPre-training Strategy=EdgePred2024.0280.19
GPFPre-training Strategy=EdgePred2024.0279.96
GPF-plusPre-training Strategy=EdgePred2024.0279.88
SUPThardPre-training Strategy=Infomax2024.0279.64
SUPTsoftPre-training Strategy=Infomax2024.0279.45
GPFPre-training Strategy=AttrMasking2022.0978.91
GPF-plusPre-training Strategy=AttrMasking2022.0978.9
GPFPre-training Strategy=Infomax2024.0278.87
GPF-plusPre-training Strategy=Infomax2024.0278.85
GPF-plusPre-training Strategy=ContextPred2022.0977.71
GPFPre-training Strategy=ContextPred2022.0977.42
GPF-plusPre-training Strategy=Infomax2022.0977.03
GPFPre-training Strategy=Infomax2022.0977.02
GPF-plusPre-training Strategy=EdgePred2022.0977
GPFPre-training Strategy=EdgePred2022.0976.98
GPPT (w/o ol)Pre-training Strategy=EdgePred2022.0976.85
GPPTw/o olPre-training Strategy=EdgePred2024.0276.85
EPGATInput Data=PPI + orthology data2026.0676.57
FTPre-training Strategy=AttrMasking2022.0973.93
FTPre-training Strategy=AttrMasking2024.0273.93
EPGATInput Data=PPI + subcellular localization2026.0672.57
EPGATInput Data=PPI + expression data2026.0672.32
FTPre-training Strategy=ContextPred2022.0972.1
FTPre-training Strategy=ContextPred2024.0272.1
FTPre-training Strategy=EdgePred2022.0971.54
FTPre-training Strategy=EdgePred2024.0271.54
FTPre-training Strategy=Infomax2022.0971.29
FTPre-training Strategy=Infomax2024.0271.29
SUPTsoftPre-training Strategy=GCL2024.0269.57
SUPThardPre-training Strategy=GCL2024.0268.59
DCInput Data=PPI2026.0668.07
GPFPre-training Strategy=GCL2024.0267.91
GPF-plusPre-training Strategy=GCL2022.0967.89
FTPre-training Strategy=GCL2022.0967.76
FTPre-training Strategy=GCL2024.0267.76
GPFPre-training Strategy=GCL2022.0967.6
GPF-plusPre-training Strategy=GCL2024.0266.71
N2V-NLPInput Data=PPI2026.0665.8
MLPInput Data=PPI2026.0658.95
GPPTPre-training Strategy=EdgePred2022.0956.23
GPPTPre-training Strategy=EdgePred2024.0256.23
GraphPromptPre-training Strategy=EdgePred2022.0949.48
GraphPromptPre-training Strategy=EdgePred2024.0249.48