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Papers Benchmarks Datasets Tasks

Gene regulatory network inference research benchmarks · SOTA2 Research

Gene regulatory network inference

Benchmarks

Dataset NameSOTA MethodSort

Dataset NameSOTA methodMetricTrendResultsLast Updated

Simulated Gene Regulatory Network full sweep

59F1 Score

48

Jul 7, 2026

hHEP STR network

92.7AUPRC

14

May 12, 2026

Yeast cell cycle

97.18Sparsity

12

Feb 26, 2026

Breast cancer in pseudotime

95.7Sparsity

12

Feb 26, 2026

SIM350 5% noise (test)

96Sparsity

12

Feb 26, 2026

49.76Recall

7

Jun 2, 2026

MDC STR network

92.8AUPRC

6

May 12, 2026

0.01p-value

5

Jun 2, 2026

0.01p-value

5

Jun 2, 2026

0.01p-value

5

Jun 2, 2026

0.01p-value

5

Jun 2, 2026

Simulated biological network n=2000, sp=0.9, R2=0.7

0.53AUPR

4

Jul 7, 2026

UGRN NSP networks

71.6AUPRC

4

May 12, 2026

MESC L G network

57.8AUPRC

3

May 12, 2026

UGRN SPC networks

68.6AUPRC

2

May 12, 2026

MESC STR network

96.6AUPRC

2

May 12, 2026

Popular datasets

MESC UGRN PBMC SIM350 Breast cancer in pseudotime

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