Variant Calling on GIAB HG002 truth set (test)
89.1F1 Score (Variant)QA-BPE-seq
Evaluation results
| Method | Links | |
|---|---|---|
| QA-BPE-seqRelative Wall-clock Time=10.2x2026.02 | 89.1 | |
| CharFormerRelative Wall-clock Time=10.4x2026.02 | 85.6 | |
| DNABERT-kRelative Wall-clock Time=9.8x2026.02 | 85.1 | |
| BPE-dropoutRelative Wall-clock Time=10.2x2026.02 | 84.1 | |
| SentencePieceRelative Wall-clock Time=10.1x2026.02 | 83.7 | |
| WordPieceRelative Wall-clock Time=10.0x2026.02 | 82.9 | |
| Standard BPERelative Wall-clock Time=10.0x2026.02 | 82.4 | |
| CANINERelative Wall-clock Time=22.7x2026.02 | 81.8 | |
| ByT5Relative Wall-clock Time=25.3x2026.02 | 81.2 |