Sequence Reconstruction on Genomic Reads ART simulator 150bp paired-end GRCh38 reference
33.8Reconstruction RateByT5
Evaluation results
| Method | Links | |
|---|---|---|
| ByT5Relative Wall-clock Time=25.3x2026.02 | 33.8 | |
| CANINERelative Wall-clock Time=22.7x2026.02 | 32.5 | |
| Standard BPERelative Wall-clock Time=10.0x2026.02 | 31.7 | |
| WordPieceRelative Wall-clock Time=10.0x2026.02 | 30.8 | |
| SentencePieceRelative Wall-clock Time=10.1x2026.02 | 30.1 | |
| BPE-dropoutRelative Wall-clock Time=10.2x2026.02 | 29.5 | |
| DNABERT-kRelative Wall-clock Time=9.8x2026.02 | 28.7 | |
| CharFormerRelative Wall-clock Time=10.4x2026.02 | 27.9 | |
| QA-BPE-seqRelative Wall-clock Time=10.2x2026.02 | 24.1 |