Top 100 independent loci replication on Hematopoiesis traits (MCH, IRF, RDW)
79.67Replicated Loci CountContext-aware KGWAS (Replace with perturb graph)
Evaluation results
| Method | Links | |
|---|---|---|
| Context-aware KGWAS (Replace with perturb graph)# Edges=625K2026.03 | 79.67 | |
| KGWAS + Prioritize genes# Edges=1.3M2026.03 | 78 | |
| KGWAS + Prune edge types# Edges=3.4M2026.03 | 67.33 | |
| KGWAS + Collapse GG edges# Edges=2.3M2026.03 | 66.67 | |
| KGWAS + Remove gene programs# Edges=12.1M2026.03 | 65.33 | |
| KGWAS# Edges=12.1M2026.03 | 62.33 | |
| GWAS# Edges=02026.03 | 49 | |
| KGWAS + Prioritize genes# Edges=1.3M2026.03 | 36 | |
| Context-aware KGWAS (Replace with perturb graph)# Edges=625K2026.03 | 34.67 | |
| KGWAS + Prune edge types# Edges=3.4M2026.03 | 26.33 | |
| KGWAS + Collapse GG edges# Edges=2.3M2026.03 | 26 | |
| KGWAS# Edges=12.1M2026.03 | 24.67 | |
| KGWAS + Remove gene programs# Edges=12.1M2026.03 | 24 | |
| GWAS# Edges=02026.03 | 15 |