Species-level classification on DNA barcodes seen species
0.997AccuracyBLAST
Evaluation Results
| Method | Links | |
|---|---|---|
| BLAST#Param=N/A, TPS (seq/s)=N/A, Duration (s)=1495, Evaluation Protocol=Deterministic (N/A)2023.11 | 0.997 | |
| DNABERT-2#Param=118.9 M, TPS (seq/s)=134, Duration (s)=101, Evaluation Protocol=Finetuned2023.11 | 0.997 | |
| DNABERT-S#Param=117.1 M, TPS (seq/s)=134, Duration (s)=101, Evaluation Protocol=Finetuned2023.11 | 0.997 | |
| BarcodeBERT (4-4-4)#Param=29.1 M, TPS (seq/s)=484, Duration (s)=27, Evaluation Protocol=Finetuned2023.11 | 0.997 | |
| DNABERT (k=6)#Param=88.1 M, TPS (seq/s)=50, Duration (s)=248, Evaluation Protocol=Finetuned2023.11 | 0.995 | |
| Nucleotide Transformer#Param=55.9 M, TPS (seq/s)=95, Duration (s)=140, Evaluation Protocol=Finetuned2023.11 | 0.995 | |
| BarcodeBERT w/o pretraining#Param=29.1 M, TPS (seq/s)=484, Duration (s)=27, Evaluation Protocol=Finetuned2023.11 | 0.995 | |
| HyenaDNA-tiny (d256)#Param=1.6 M, TPS (seq/s)=1167, Duration (s)=11, Evaluation Protocol=Finetuned2023.11 | 0.994 | |
| BarcodeBERT (4-4-4)#Param=29.1 M, TPS (seq/s)=484, Duration (s)=27, Evaluation Protocol=Linear probe2023.11 | 0.992 | |
| CNN encoder#Param=1.8 M, TPS (seq/s)=934, Duration (s)=13, Evaluation Protocol=Finetuned2023.11 | 0.982 | |
| DNABERT (k=6)#Param=88.1 M, TPS (seq/s)=50, Duration (s)=248, Evaluation Protocol=Linear probe2023.11 | 0.981 | |
| DNABERT-S#Param=117.1 M, TPS (seq/s)=134, Duration (s)=101, Evaluation Protocol=Linear probe2023.11 | 0.965 | |
| Nucleotide Transformer#Param=55.9 M, TPS (seq/s)=95, Duration (s)=140, Evaluation Protocol=Linear probe2023.11 | 0.962 | |
| DNABERT-2#Param=118.9 M, TPS (seq/s)=134, Duration (s)=101, Evaluation Protocol=Linear probe2023.11 | 0.957 | |
| HyenaDNA-tiny (d256)#Param=1.6 M, TPS (seq/s)=1167, Duration (s)=11, Evaluation Protocol=Linear probe2023.11 | 0.935 |