Genus-level 1-NN probe on DNA barcodes (unseen species)
83.9AccuracyBLAST
Evaluation Results
| Method | Links | |
|---|---|---|
| BLAST#Param=N/A, TPS (seq/s)=N/A, Duration (s)=6022023.11 | 83.9 | |
| BarcodeBERT (4-4-4)#Param=29.1 M, TPS (seq/s)=484, Duration (s)=1082023.11 | 78.5 | |
| CNN encoder#Param=1.8 M, TPS (seq/s)=934, Duration (s)=552023.11 | 56 | |
| HyenaDNA-tiny (d256)#Param=1.6 M, TPS (seq/s)=1167, Duration (s)=762023.11 | 50.6 | |
| DNABERT (k=6)#Param=88.1 M, TPS (seq/s)=50, Duration (s)=10212023.11 | 48.1 | |
| Nucleotide Transformer#Param=55.9 M, TPS (seq/s)=95, Duration (s)=5362023.11 | 40.1 | |
| BarcodeBERT w/o pretraining#Param=29.1 M, TPS (seq/s)=484, Duration (s)=1082023.11 | 37.9 | |
| DNABERT-S#Param=117.1 M, TPS (seq/s)=134, Duration (s)=3812023.11 | 30.6 | |
| DNABERT-2#Param=118.9 M, TPS (seq/s)=134, Duration (s)=3812023.11 | 23.5 |