Sequence-based Affinity Prediction on PEER BindingDB 1.0 (test)
1.03RMSEBioMatrix-4B
Evaluation Results
| Method | Links | |
|---|---|---|
| BioMatrix-4B2026.06 | 1.03 | |
| BioMatrix-1.7B2026.06 | 1.284 | |
| Literature SOTA2026.06 | 1.34 | |
| CNN2026.06 | 1.497 | |
| ProtBertfeature extractor with frozen weights=false2026.06 | 1.549 | |
| ESM-1bfeature extractor with frozen weights=false2026.06 | 1.556 | |
| ResNet2026.06 | 1.565 | |
| Transformer2026.06 | 1.566 | |
| ESM-1bfeature extractor with frozen weights=true2026.06 | 1.571 | |
| LSTM2026.06 | 1.572 | |
| ProtBertfeature extractor with frozen weights=true2026.06 | 1.649 |