Protein-related instruction tasks on Mol-Instructions benchmark leaderboard · SOTA2 Research

Protein-related instruction tasks on Mol-Instructions

62.09Protein Function ROUGE-LBioMatrix-4B

Evaluation Results

Method	Links
BioMatrix-4B2026.06		62.09	68.56	73.46	73.06	60.36	56.22	80.19	79.2	70.64	67.64
BioMatrix-1.7B2026.06		61.88	68.46	74.09	73.45	56.16	52.55	79	78.03	69.43	66.48
BioT5+2026.06		57	—	—	72	—	53	—	68	—	62.5
SciReasoner-data-4B2026.06		53.21	59.93	53.87	52.54	48.3	45.46	69.07	67.6	57.95	54.7
Qwen3 (PFUA)2026.06		44.29	66.43	72.32	54.18	54.98	44.26	63.6	41.9	64.33	46.16
Mol-Instructions-7B2026.06		43	—	—	52	—	46	—	44	—	46.25
SciReasoner-data-1.7B2026.06		42.9	49.67	48.41	46.99	52.66	49.7	30.12	26.23	45.22	41.46
DeepSeek-R12026.06		38.31	59.71	47.95	34.15	48.36	34.36	58.11	35.7	53.53	35.63
Qwen2.5-3B-R12026.06		38.04	49.1	61.33	46.54	51.01	41.1	42.56	32.37	51	39.51
Kimi-k22026.06		35.73	57.98	67.68	46.9	39.76	28.56	60.08	36.78	56.38	36.99
Qwen2.5-3B-SFT2026.06		30.85	40.74	41.45	34.52	42.6	32.13	33.95	25.68	39.69	30.79
BioMedGPT-R12026.06		26.8	35.16	27.64	22.22	30.6	23.33	27.78	20.82	30.3	23.29
DeepSeek-R12026.06		25.68	38.23	32.36	23.75	30.35	21.46	28.54	16.73	32.37	21.91
Qwen32026.06		24.52	37.42	50.66	40.67	16.44	12.44	42.61	26.34	36.78	25.99
DeepSeek-R12026.06		19.68	26.65	21.86	18.02	26.09	19.7	16.53	10.76	22.78	17.04
Kimi-k22026.06		17.32	25.08	22.99	17.97	27.28	20.07	22.3	14.8	24.41	17.54
Kimi-k22026.06		14.14	22.3	18.56	13.15	21.64	17.12	45.41	26.44	26.98	17.71
Qwen32026.06		12.62	18.53	15.93	12.27	15.13	11.28	18.59	11.94	17.05	12.03
Prot2Text2026.06		11.61	16.56	18.24	13.05	11.49	9.37	49.14	47.38	23.86	20.35
ProtT32026.06		10.81	15.46	17.36	12.41	16.83	12.22	19.49	15.96	17.28	12.85
GPT-OSS2026.06		5	—	—	2	—	2	—	7	—	4
BioMedGPT2026.06		4.28	5.98	7.97	6.28	1.81	1.81	4.84	4.12	5.15	4.12