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Protein-protein Interaction Affinity Regression on PEER PPI Affinity 1.0 (test)

2.195RMSEProtBert
2.161562.387282.6132.83872Jun 20, 2026

Evaluation results

MethodLinks
ProtBertfeature extractor with frozen weights=false2026.062.195
ESM-1bfeature extractor with frozen weights=false2026.062.281
BioMatrix-4B2026.062.35
BioMatrix-1.7B2026.062.446
Transformer2026.062.499
CNN2026.062.796
LSTM2026.062.853
DDE2026.062.908
Moran2026.062.984
ProtBertfeature extractor with frozen weights=true2026.062.996
ResNet2026.063.005
ESM-1bfeature extractor with frozen weights=true2026.063.031