Protein-ligand binding affinity prediction on ATOM3D LBA 30% sequence identity benchmark leaderboard · SOTA2 Research

Protein-ligand binding affinity prediction on ATOM3D LBA 30% sequence identity

1.311RMSECheapNet

Evaluation Results

Method	Links
CheapNet2026.06		1.311	0.642	0.639
CheapNet2026.06		1.311	0.642	0.639
GET2026.06		1.327	0.62	0.611
CPES2026.06		1.327	0.651	0.641
GET2026.06		1.327	0.62	0.611
CPES2026.06		1.327	0.651	0.641
BindNet2026.06		1.34	0.632	0.62
BindNet2026.06		1.34	0.632	0.62
LEFTNet2026.06		1.366	0.592	0.58
LEFTNet2026.06		1.366	0.592	0.58
ProFSA2026.06		1.377	0.628	0.62
ProFSA2026.06		1.377	0.628	0.62
EGNN-PLM2026.06		1.403	0.565	0.544
EGNN-PLM2026.06		1.403	0.565	0.544
Uni-Mol2026.06		1.434	0.565	0.54
Uni-Mol2026.06		1.434	0.565	0.54
GeoSSL2026.06		1.451	0.577	0.572
GeoSSL2026.06		1.451	0.577	0.572
ProNet2026.06		1.463	0.551	0.551
ProNet2026.06		1.463	0.551	0.551
Holoprot2026.06		1.464	0.509	0.5
Holoprot2026.06		1.464	0.509	0.5
ProtTrans2026.06		1.544	0.438	0.434
ProtTrans2026.06		1.544	0.438	0.434
IEConv2026.06		1.554	0.414	0.428
IEConv2026.06		1.554	0.414	0.428
Atom3D-GNN2026.06		1.601	0.545	0.533
Atom3D-GNN2026.06		1.601	0.545	0.533
DeepDTA2026.06		1.866	0.472	0.471
DeepDTA2026.06		1.866	0.472	0.471
TAPE2026.06		1.89	0.338	0.286
TAPE2026.06		1.89	0.338	0.286
SSA2026.06		1.985	0.165	0.152
SSA2026.06		1.985	0.165	0.152