Protein fitness prediction on ProteinGym
0.496Average Spearman CorrelationS3F-MSA
Evaluation results
| Method | Links | |||
|---|---|---|---|---|
| S3F-MSAMSA=true2024.12 | 0.496 | 0 | 0 | |
| S2F-MSAMSA=true2024.12 | 0.487 | -0.009 | 0.001 | |
| S3FMSA=false2024.12 | 0.47 | -0.026 | 0.005 | |
| SaProt2024.12 | 0.457 | -0.039 | 0 | |
| TranceptEVE LModel size=L2024.12 | 0.456 | -0.04 | 0.006 | |
| GEMME2024.12 | 0.455 | -0.041 | 0.006 | |
| S2FMSA=false2024.12 | 0.454 | -0.042 | 0.005 | |
| ProtSSN2024.12 | 0.442 | -0.054 | 0.007 | |
| EVE2024.12 | 0.439 | -0.057 | 0.005 | |
| MSA Transformer2024.12 | 0.434 | -0.062 | 0.011 | |
| Tranception LModel size=L2024.12 | 0.434 | -0.062 | 0.007 | |
| ESM-IF2024.12 | 0.422 | -0.074 | 0.01 | |
| DeepSequence2024.12 | 0.419 | -0.077 | 0.007 | |
| ESM22024.12 | 0.414 | -0.082 | 0.013 | |
| ProGen2 XLModel size=XL2024.12 | 0.391 | -0.105 | 0.01 | |
| MIF2024.12 | 0.383 | -0.113 | 0.011 | |
| MIF-ST2024.12 | 0.383 | -0.113 | 0.01 | |
| CARP2024.12 | 0.368 | -0.128 | 0.013 | |
| ProteinMPNN2024.12 | 0.258 | -0.238 | 0.013 |