Named Entity Recognition on BLURB NER tasks
0.865BC5dis F1diseaseBERT
Evaluation results
| Method | Links | ||||||
|---|---|---|---|---|---|---|---|
| diseaseBERTModel size=base, Version=biobert2021.04 | 0.865 | — | 0.871 | — | — | 0.864 | |
| KeBioLMModel size=base, Fine-tuning=true, Batch Size=16, Maximal input length=512, Number of runs (seeds)=52021.04 | 0.861 | 0.933 | 0.891 | 0.851 | 0.82 | 0.871 | |
| PubMedBERTModel size=base, Version=abstract2021.04 | 0.856 | 0.933 | 0.878 | 0.845 | 0.801 | 0.863 | |
| BioBERTModel size=base, Version=v1.12021.04 | 0.847 | 0.929 | 0.891 | 0.838 | 0.794 | 0.86 | |
| SciBERTModel size=base, Version=scivocab-uncased2021.04 | 0.845 | 0.925 | 0.881 | 0.834 | 0.795 | 0.856 | |
| bio-lmModel size=base, Version=ROBERTa-base-PM-M3-Voc, Metric Type=Macro F12021.04 | 0.838 | 0.929 | 0.877 | 0.87 | 0.806 | 0.863 | |
| BlueBERTModel size=base, Version=pubmed-mimic2021.04 | 0.837 | 0.912 | 0.88 | 0.819 | 0.787 | 0.847 | |
| ClinicalBERTModel size=base2021.04 | 0.83 | 0.908 | 0.883 | 0.817 | 0.786 | 0.845 |