Membrane Permeability Prediction on CycPeptMPDB
0.7172R2HELM-BERT
Evaluation results
| Method | Links | ||||
|---|---|---|---|---|---|
| HELM-BERTEvaluation Protocol=Full Fine-tuning2025.12 | 0.7172 | 0.8493 | 0.4164 | 0.2946 | |
| HELM-BERTEvaluation Protocol=Head Fine-tuning2025.12 | 0.6181 | 0.7906 | 0.4845 | 0.3527 | |
| MoLFormer–XLEvaluation Protocol=Full Fine-tuning2025.12 | 0.5776 | 0.7673 | 0.5094 | 0.3668 | |
| MoLFormer–XLEvaluation Protocol=Head Fine-tuning2025.12 | 0.551 | 0.7446 | 0.5255 | 0.3914 | |
| PeptideCLMEvaluation Protocol=Full Fine-tuning2025.12 | 0.536 | 0.7413 | 0.5344 | 0.3847 | |
| HELM-BERTEvaluation Protocol=Linear Probing2025.12 | 0.4424 | 0.6771 | 0.586 | 0.4445 | |
| PeptideCLMEvaluation Protocol=Head Fine-tuning2025.12 | 0.4297 | 0.6569 | 0.5927 | 0.4426 | |
| PeptideCLMEvaluation Protocol=Linear Probing2025.12 | 0.3597 | 0.6035 | 0.6282 | 0.4703 | |
| MoLFormer–XLEvaluation Protocol=Linear Probing2025.12 | 0.307 | 0.5611 | 0.6535 | 0.495 |