Functional Site Prediction on StructTokenBench (Fold)
53.18BindInt (AUROC)FoldSeek
Evaluation results
| Method | Links | |||||||
|---|---|---|---|---|---|---|---|---|
| FoldSeek2026.03 | 53.18 | 52.37 | 53.43 | 56.37 | 49.26 | 47.7 | 54.52 | |
| Van.VQ + ProVQquantization=ProVQ, base_model=Vanilla VQ2026.03 | 48.95 | 65.36 | 61.62 | 63.99 | 54.56 | 74.65 | 64.16 | |
| AminoA. + ProVQquantization=ProVQ, base_model=AminoA.2026.03 | 48.28 | 63.9 | 64.65 | 65.67 | 56.66 | 75.32 | 60.29 | |
| Van.VQbase_model=Vanilla VQ (ESM3)2026.03 | 47.25 | 62.02 | 58.89 | 67.58 | 56.98 | 75.99 | 59.28 | |
| AminoA.base_model=AminoAseed2026.03 | 47.11 | 65.73 | 62.19 | 65.95 | 57.23 | 74.97 | 62.16 | |
| ProTokens2026.03 | 44.66 | 58.47 | 58.16 | 56.14 | 56.23 | 77.25 | 54.69 | |
| ESM32026.03 | 44.3 | 62.84 | 61.09 | 65.33 | 55.22 | 74.7 | 63.69 |