DNA Sequence Reconstruction on Microsoft dataset
0.0003Levenshtein Distance (dL)TReconLM
Evaluation results
| Method | Links | ||
|---|---|---|---|
| TReconLMN=10, Protocol=fine-tuned2025.07 | 0.0003 | 1.37 | |
| TReconLMN=9, Protocol=fine-tuned2025.07 | 0.0006 | 3.84 | |
| TReconLMN=8, Protocol=fine-tuned2025.07 | 0.0007 | 3.52 | |
| TReconLMN=7, Protocol=fine-tuned2025.07 | 0.0009 | 5.3 | |
| DNAformerN=9, Protocol=fine-tuned2025.07 | 0.0011 | 4.97 | |
| DNAformerN=10, Protocol=fine-tuned2025.07 | 0.0011 | 4.34 | |
| TReconLMN=10, Protocol=pretrained2025.07 | 0.0011 | 6.85 | |
| TReconLMN=9, Protocol=pretrained2025.07 | 0.0012 | 7 | |
| ITRN=102025.07 | 0.0013 | 11 | |
| DNAformerN=8, Protocol=fine-tuned2025.07 | 0.0013 | 5.71 | |
| DNAformerN=7, Protocol=fine-tuned2025.07 | 0.0014 | 8.96 | |
| TReconLMN=6, Protocol=fine-tuned2025.07 | 0.0015 | 8.81 | |
| TReconLMN=8, Protocol=pretrained2025.07 | 0.0015 | 9.23 | |
| ITRN=92025.07 | 0.0015 | 13.5 | |
| ITRN=82025.07 | 0.0017 | 13.6 | |
| TReconLMN=7, Protocol=pretrained2025.07 | 0.0017 | 10.4 | |
| ITRN=72025.07 | 0.002 | 14.9 | |
| DNAformerN=6, Protocol=fine-tuned2025.07 | 0.0023 | 11.7 | |
| TReconLMN=6, Protocol=pretrained2025.07 | 0.0023 | 14.9 | |
| TReconLMN=5, Protocol=fine-tuned2025.07 | 0.0025 | 13.5 | |
| ITRN=62025.07 | 0.0028 | 21.9 | |
| MUSCLEN=102025.07 | 0.0033 | 27.9 | |
| TrellisBMAN=102025.07 | 0.0034 | 17.1 | |
| MUSCLEN=92025.07 | 0.0039 | 30.5 | |
| TrellisBMAN=92025.07 | 0.0045 | 23.5 | |
| TReconLMN=4, Protocol=fine-tuned2025.07 | 0.0045 | 23.2 | |
| TReconLMN=5, Protocol=pretrained2025.07 | 0.0045 | 24.1 | |
| MUSCLEN=82025.07 | 0.0048 | 36.5 | |
| TrellisBMAN=82025.07 | 0.0048 | 23.1 | |
| DNAformerN=5, Protocol=fine-tuned2025.07 | 0.0053 | 21 | |
| TrellisBMAN=72025.07 | 0.0055 | 27.9 | |
| ITRN=52025.07 | 0.0055 | 33.8 | |
| TrellisBMAN=62025.07 | 0.0071 | 35.4 | |
| TReconLMN=4, Protocol=pretrained2025.07 | 0.0073 | 38.9 | |
| ITRN=42025.07 | 0.0078 | 42.2 | |
| MUSCLEN=62025.07 | 0.0082 | 53.2 | |
| DNAformerN=4, Protocol=fine-tuned2025.07 | 0.0086 | 34.1 | |
| MUSCLEN=72025.07 | 0.0086 | 57.8 | |
| BMALAN=102025.07 | 0.009 | 32.2 | |
| MUSCLEN=52025.07 | 0.0092 | 57.6 | |
| BMALAN=92025.07 | 0.0106 | 41.5 | |
| TrellisBMAN=52025.07 | 0.0111 | 49.6 | |
| TReconLMN=3, Protocol=fine-tuned2025.07 | 0.013 | 49.4 | |
| BMALAN=82025.07 | 0.0131 | 51.7 | |
| MUSCLEN=42025.07 | 0.0145 | 73.9 | |
| TrellisBMAN=42025.07 | 0.0149 | 60.9 | |
| BMALAN=72025.07 | 0.0154 | 50 | |
| TReconLMN=3, Protocol=pretrained2025.07 | 0.0155 | 63.5 | |
| DNAformerN=3, Protocol=fine-tuned2025.07 | 0.0182 | 61.4 | |
| BMALAN=62025.07 | 0.0218 | 63.6 | |
| BMALAN=52025.07 | 0.0281 | 73 | |
| BMALAN=42025.07 | 0.0398 | 86.1 | |
| TReconLMN=2, Protocol=fine-tuned2025.07 | 0.0419 | 89.1 | |
| MUSCLEN=32025.07 | 0.0482 | 98.2 | |
| BMALAN=32025.07 | 0.0519 | 90.3 | |
| TReconLMN=2, Protocol=pretrained2025.07 | 0.0534 | 96.1 | |
| ITRN=22025.07 | 0.0539 | 95.1 | |
| VSN=22025.07 | 0.0567 | 97.5 | |
| VSN=32025.07 | 0.0573 | 99.9 | |
| VSN=62025.07 | 0.061 | 97.3 | |
| VSN=72025.07 | 0.0617 | 95.5 | |
| VSN=82025.07 | 0.0626 | 96 | |
| VSN=52025.07 | 0.063 | 97.1 | |
| VSN=92025.07 | 0.065 | 95 | |
| RobuSeqNetN=9, Protocol=fine-tuned2025.07 | 0.0657 | 91.4 | |
| MUSCLEN=22025.07 | 0.0669 | 99.2 | |
| VSN=102025.07 | 0.0704 | 95.7 | |
| VSN=42025.07 | 0.0733 | 96.9 | |
| DNAformerN=2, Protocol=fine-tuned2025.07 | 0.0734 | 97 | |
| RobuSeqNetN=10, Protocol=fine-tuned2025.07 | 0.0736 | 91.5 | |
| RobuSeqNetN=8, Protocol=fine-tuned2025.07 | 0.0739 | 93.2 | |
| RobuSeqNetN=7, Protocol=fine-tuned2025.07 | 0.0804 | 94.9 | |
| RobuSeqNetN=6, Protocol=fine-tuned2025.07 | 0.0885 | 95.3 | |
| ITRN=32025.07 | 0.0904 | 99.1 | |
| RobuSeqNetN=5, Protocol=fine-tuned2025.07 | 0.104 | 97.5 | |
| RobuSeqNetN=4, Protocol=fine-tuned2025.07 | 0.114 | 98.1 | |
| BMALAN=22025.07 | 0.125 | 99.5 | |
| RobuSeqNetN=3, Protocol=fine-tuned2025.07 | 0.137 | 99.9 | |
| TrellisBMAN=32025.07 | 0.155 | 99.3 | |
| TrellisBMAN=22025.07 | 0.191 | 99.9 | |
| RobuSeqNetN=2, Protocol=fine-tuned2025.07 | 0.192 | 99.5 |