Binding affinity prediction on SKEMPI2 single mutations
0.672Pearson Correlation (Overall)DiffAffinity
Evaluation results
| Method | Links | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| DiffAffinity2023.10 | 0.672 | 0.523 | 1.288 | 0.923 | 0.733 | 0.887 | 0.429 | 0.409 | |
| DiffAffinity*SidechainDiff encoder=absent2023.10 | 0.657 | 0.523 | 1.312 | 0.931 | 0.742 | 0.741 | 0.417 | 0.396 | |
| DDGPred2023.10 | 0.652 | 0.359 | 1.309 | 0.936 | 0.656 | 0.884 | 0.351 | 0.318 | |
| RDE-Net2023.10 | 0.637 | 0.491 | 1.341 | 0.961 | 0.72 | 0.885 | 0.413 | 0.385 | |
| ESM2*2023.10 | 0.625 | 0.468 | 1.357 | 0.986 | 0.707 | 0.879 | 0.391 | 0.342 | |
| flex ddG2023.10 | 0.425 | 0.431 | 1.457 | 0.997 | 0.677 | 0.874 | 0.433 | 0.435 | |
| Rosetta2023.10 | 0.325 | 0.367 | 1.183 | 0.987 | 0.674 | 0.834 | 0.351 | 0.418 | |
| DiffAffinity-Linearprojection=linear2023.10 | 0.318 | 0.293 | 1.649 | 1.175 | 0.651 | 0.854 | 0.209 | 0.202 | |
| FoldX2023.10 | 0.315 | 0.361 | 1.651 | 1.146 | 0.657 | 0.839 | 0.382 | 0.36 | |
| ESM-IF2023.10 | 0.296 | 0.287 | 1.673 | 1.137 | 0.605 | 0.776 | 0.391 | 0.364 | |
| ESM-1v2023.10 | 0.191 | 0.157 | 1.723 | 1.192 | 0.549 | 0.77 | 0.042 | 0.027 | |
| ESM22023.10 | 0.1 | 0.12 | 1.73 | 1.21 | 0.541 | 0.734 | 0.019 | 0.036 |