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ResearchFormerly WizWand

Trajectory Inference

Benchmarks

DatasetSOTA methodMetricTrendResultsLast updated

Embryoid body differentiation T = 5 timepoints, 3 stages

0.0611-hop WD

7

May 12, 2026

Lotka–Volterra Path Measure

0.271KL Divergence (nu^A || nu^B)

7

Apr 23, 2026

Lotka–Volterra tau=0.875

0.061EMD

7

Apr 23, 2026

Lotka–Volterra tau=0.625

0.036EMD

7

Apr 23, 2026

Lotka–Volterra (tau=0.375)

2.6EMD

7

Apr 23, 2026

Lotka–Volterra tau=0.125

0.018EMD

7

Apr 23, 2026

0.079KL Divergence (A || B)

7

Apr 23, 2026

0.045EMD

7

Apr 23, 2026

0.045EMD

7

Apr 23, 2026

Petal dataset tau=0.5

0.037EMD

7

Apr 23, 2026

Petal dataset tau=0.25

0.023EMD

7

Apr 23, 2026

Petal dataset tau=0

0.011EMD

7

Apr 23, 2026

Repressilator synthetic (val)

0.015KL Divergence (nu_A || nu_B)

7

Apr 23, 2026

Repressilator (tau=0.9) synthetic (val)

0.116EMD

7

Apr 23, 2026

Repressilator tau=0.7 synthetic (val)

0.094EMD

7

Apr 23, 2026

Repressilator tau=0.5 synthetic (val)

0.08EMD

7

Apr 23, 2026

Repressilator tau=0.3 synthetic (val)

0.056EMD

7

Apr 23, 2026

Repressilator (tau=0.1) synthetic (val)

0.036EMD

7

Apr 23, 2026

Multiome (Multi) 5D PCA scRNA-seq data (held-out marginal distributions)

0.89EMD

6

Mar 4, 2026

Embryoid Body (EB) 5D PCA scRNA-seq (held-out marginal distributions)

0.711EMD

6

Mar 4, 2026

Cite-seq 5D PCA scRNA-seq data (held-out marginal distributions)

0.793EMD

6

Mar 4, 2026

HF Trajectory-level (full)

29.706KL Divergence (A || B)

5

Apr 23, 2026

HF τ = 0.75 (val)

1.168EMD

5

Apr 23, 2026

HF τ = 0.25 (val)

0.956EMD

5

Apr 23, 2026

42.268KL(νA∥νB)

5

Apr 23, 2026