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Phenotype classification research benchmarks · SOTA2 Research

Phenotype classification

Benchmarks

Dataset NameSOTA MethodSort

Dataset NameSOTA methodMetricTrendResultsLast Updated

MIMIC-III v1.4 (test)

40.13F1 Score

10

May 12, 2026

Phecodes Lower Quartile by Prevalence N=173 (test)

80.8AUROC

10

Mar 5, 2026

Phecodes Upper Quartile by Prevalence N=173 (test)

0.804AUROC

10

Mar 5, 2026

Phecodes All N=691 (test)

0.812AUROC

10

Mar 5, 2026

GTEx target (test)

DANN supervised

99.96Accuracy

8

Mar 10, 2026

TCGA target (test)

98.76Accuracy

8

Mar 10, 2026

0.47AUPRC

7

Feb 26, 2026

PhenoNEST (val)

PhenoNest (Automated Semantic Dataset Builder)

22True Positives (TP)

4

Jul 7, 2026

Popular datasets

Phecodes MIMIC-III MIMIC TCGA GTEx

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