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Drug response prediction research benchmarks · SOTA2 Research

Drug response prediction

Benchmarks

Dataset NameSOTA MethodSort

Dataset NameSOTA methodMetricTrendResultsLast Updated

0.058RMSE

12

Feb 26, 2026

0.052RMSE

12

Feb 26, 2026

GDSC NSCLC (Trametinib) v1 (test)

Robust Dorfman Adaptive EN (OGK)

2.17RMSE

10

Feb 26, 2026

CellMiner (test)

0.442PCC

10

Feb 26, 2026

0.532PCC

10

May 21, 2026

GDSC2 (10-fold drug-blind CV, leave-one-drug-out CV)

Mechanism-stratified training

0.772All-drug Correlation (r)

7

May 21, 2026

0.334R2 Score

7

Mar 13, 2026

GDSC2 Unseen pairs (n=4,219) v1.0

0.261R2 Score

7

Mar 13, 2026

GDSC2 Seen pairs v1.0

0.354R2 Score

7

Mar 13, 2026

GDSC (Disjoint–set)

2.453RMSE

5

Feb 26, 2026

GDSC (Drug–blind)

2.515RMSE

5

Feb 26, 2026

GDSC (Cell line–blind)

1.245RMSE

5

Feb 26, 2026

0.906RMSE

5

Feb 26, 2026

sci-Plex3 10 μM dose (test)

0.76E[R²] (all)

5

Feb 26, 2026

sci-Plex3 1 μM dose (test)

0.77E[r²] (All)

5

Feb 26, 2026

DRP (Drug Response Prediction)

1.201RMSE

2

Feb 26, 2026

Popular datasets

GDSC GDSC2 sci-Plex3 sci-Plex CellMiner

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