Virtual Cell Modeling on BBBC021
4.03FIDMicroscopy Transformer (one-hot)
Evaluation results
| Method | Links | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Microscopy Transformer (one-hot)Conditioning=One-Hot2026.03 | 4.03 | — | — | — | — | — | — | — | — | 0.31 | — | — | |
| Microscopy Transformer (MolGPS)Conditioning=MolGPS2026.03 | 4.12 | — | — | — | — | — | — | — | — | 0.16 | — | — | |
| Microscopy Transformer (Morgan fingerprints)Conditioning=Morgan Fingerprints2026.03 | 4.16 | — | — | — | — | — | — | — | — | 0.18 | — | — | |
| Microscopy Transformer (unconditional)Conditioning=Unconditional2026.03 | 4.63 | — | — | — | — | — | — | — | — | 0.68 | — | — | |
| CellFluxV2Conditioning=Morgan Fingerprints2026.03 | 7.9 | — | — | — | — | — | — | — | — | 2.3 | — | — | |
| FreeBridge2026.06 | 15.35 | — | — | 0.11 | — | — | — | — | — | 1.1 | 47.28 | 1.02 | |
| CellFluxConditioning=Morgan Fingerprints2026.03 | 18.7 | — | — | — | — | — | — | — | — | 16.2 | — | — | |
| CellFlux2026.06 | 18.72 | — | — | 0.31 | — | — | — | — | — | 1.62 | 56.8 | 1.59 | |
| CellFlux2026.03 | 20.36 | 0.26 | 0.88 | -0.34 | -2.21 | -1.09 | -0.83 | -1.03 | -2.44 | 0.015 | — | — | |
| CellFluxRLTest-time scaling=True (N=4)2026.03 | 23.19 | 0.56 | 0.97 | -0.19 | -0.38 | -0.41 | -0.28 | -0.33 | 3.15 | 0.016 | — | — | |
| CellFluxRLTest-time scaling=False2026.03 | 24.01 | 0.34 | 0.96 | -0.26 | -1.04 | -0.65 | -0.53 | -0.68 | 0.46 | 0.014 | — | — | |
| IMPAConditioning=Morgan Fingerprints2026.03 | 33.7 | — | — | — | — | — | — | — | — | 26 | — | — | |
| IMPA2026.06 | 33.91 | — | — | 0.34 | — | — | — | — | — | 2.74 | 75.76 | 2.79 | |
| IMPA2026.03 | 35.7 | 0.12 | 0.79 | -0.32 | -1.02 | -1.59 | -1.05 | -1.39 | -3.19 | 0.029 | — | — | |
| PhenDiff2026.03 | 41.94 | 0.18 | 0.91 | -0.24 | -0.88 | -0.97 | -2.61 | -3.22 | -5.2 | 0.028 | — | — | |
| PhenDiff2026.06 | 48.25 | — | — | 0.38 | — | — | — | — | — | 3.08 | 107.5 | 3.26 | |
| PhenDiffConditioning=One-Hot2026.03 | 49.5 | — | — | — | — | — | — | — | — | 31 | — | — | |
| MorphoDiffConditioning=RDKit2D2026.03 | 65.8 | — | — | — | — | — | — | — | — | 79.9 | — | — |