Variant effect prediction on Human SNP 30–100k distance-to-TSS bin
0.663AUROCWisteria
Evaluation Results
| Method | Links | |
|---|---|---|
| WisteriaInput sequence length=131k bp, Tokenization=base-pair, SVM regularization strength=12026.05 | 0.663 | |
| EnformerModel architecture=Hybrid CNN and Transformer, Input sequence length=196,608 bp, Receptive field=128 bp, SVM regularization strength=12026.05 | 0.659 | |
| Caduceus-PhModel architecture=16 MambaDNA layers (hidden dimension 256), Input sequence length=131k bp, Tokenization=base-pair, SVM regularization strength=52026.05 | 0.648 | |
| HyenaDNAModel configuration=medium, Input sequence length=131k bp, Tokenization=base-pair, SVM regularization strength=12026.05 | 0.599 | |
| NT-v2Model configuration=500M multi-species, Tokenization=6-mer, Input sequence length=12k bp, SVM regularization strength=12026.05 | 0.593 |