Variant effect prediction on Human SNP (100k+ distance-to-TSS bin)
60.4AUROCWisteria
Evaluation Results
| Method | Links | |
|---|---|---|
| WisteriaInput sequence length=131k bp, Tokenization=base-pair, SVM regularization strength=102026.05 | 60.4 | |
| Caduceus-PhModel architecture=16 MambaDNA layers (hidden dimension 256), Input sequence length=131k bp, Tokenization=base-pair, SVM regularization strength=102026.05 | 58 | |
| HyenaDNAModel configuration=medium, Input sequence length=131k bp, Tokenization=base-pair, SVM regularization strength=52026.05 | 56.5 | |
| EnformerModel architecture=Hybrid CNN and Transformer, Input sequence length=196,608 bp, Receptive field=128 bp, SVM regularization strength=52026.05 | 56.3 | |
| NT-v2Model configuration=500M multi-species, Tokenization=6-mer, Input sequence length=12k bp, SVM regularization strength=102026.05 | 54 |